TCONS_00040733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040733
Unique NameTCONS_00040733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040733 ID=TCONS_00040733|Name=TCONS_00040733|organism=Clytia hemisphaerica|type=transcript|length=516bp
CCACcctaaaaaatcatgaaaaagttgatatttttcttaccaAGACGAAC
GAAACGATCGAAAGATTTCTTTGGTAACACCATCACATTCATCTTGTTCA
TCAGGGCGTTGACCATCTTTGTTTTTCAGTTCATGATCCGCTCCTTTGGC
CAACAaccatctgatgacgtcatgattgttCCAACTTGCTGCATGATGCA
ATGATGTTCCGTTATCTTCGTCTCTTCCATTGATCAACTTTTTGATTGTT
TGTTGATCAAACATTTCCAAATGACGAACTTTTCCAATCCAACCAACCCA
ATGAAGAACGTTGTGACCTTCATTGTCCACGAGTGAAAAATCTTGAGGAT
ATTTCATCAAGTGAACGAAAACGTCGAAACGATCTCCAATAACAGCCACC
ATGAGAAGTGTCCAACCATCACGACCATCACGCAACGAGTTGACGATGTT
CGGATTTTGTTGGaaaatttcttcgaatttcgcgaatttcttttcgtcca
aaattttcccaacatc
Run BLAST on NCBI

protein sequence of TCONS_00040733-protein

>TCONS_00040733-protein ID=TCONS_00040733-protein|Name=TCONS_00040733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
DVGKILDEKKFAKFEEIFQQNPNIVNSLRDGRDGWTLLMVAVIGDRFDVF
VHLMKYPQDFSLVDNEGHNVLHWVGWIGKVRHLEMFDQQTIKKLINGRDE
DNGTSLHHAASWNNHDVIRWLLAKGADHELKNKDGQRPDEQDECDGVTKE
IFRSFRSSW
Run BLAST on NCBI

transcript from alignment at sc0002541:8632..9147

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040733 ID=TCONS_00040733|Name=TCONS_00040733|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0002541:8632..9147 (Clytia hemisphaerica)
gatgttgggaaaattttggacgaaaagaaattcgcgaaattcgaagaaat
tttCCAACAAAATCCGAACATCGTCAACTCGTTGCGTGATGGTCGTGATG
GTTGGACACTTCTCATGGTGGCTGTTATTGGAGATCGTTTCGACGTTTTC
GTTCACTTGATGAAATATCCTCAAGATTTTTCACTCGTGGACAATGAAGG
TCACAACGTTCTTCATTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGG
AAATGTTTGATCAACAAACAATCAAAAAGTTGATCAATGGAAGAGACGAA
GATAACGGAACATCATTGCATCATGCAGCAAGTTGGaacaatcatgacgt
catcagatggtTGTTGGCCAAAGGAGCGGATCATGAACTGAAAAACAAAG
ATGGTCAACGCCCTGATGAACAAGATGAATGTGATGGTGTTACCAAAGAA
ATCTTTCGATCGTTTCGTTCGTCTtggtaagaaaaatatcaactttttca
tgattttttaggGTGG

Coding sequence (CDS) from alignment at sc0002541:8632..9147

>TCONS_00040733 ID=TCONS_00040733|Name=TCONS_00040733|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0002541:8632..9147 (Clytia hemisphaerica)
gatgttgggaaaattttggacgaaaagaaattcgcgaaattcgaagaaat
tttCCAACAAAATCCGAACATCGTCAACTCGTTGCGTGATGGTCGTGATG
GTTGGACACTTCTCATGGTGGCTGTTATTGGAGATCGTTTCGACGTTTTC
GTTCACTTGATGAAATATCCTCAAGATTTTTCACTCGTGGACAATGAAGG
TCACAACGTTCTTCATTGGGTTGGTTGGATTGGAAAAGTTCGTCATTTGG
AAATGTTTGATCAACAAACAATCAAAAAGTTGATCAATGGAAGAGACGAA
GATAACGGAACATCATTGCATCATGCAGCAAGTTGGaacaatcatgacgt
catcagatggtTGTTGGCCAAAGGAGCGGATCATGAACTGAAAAACAAAG
ATGGTCAACGCCCTGATGAACAAGATGAATGTGATGGTGTTACCAAAGAA
ATCTTTCGATCGTTTCGTTCGTCTtggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024815XLOC_024815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040733-exon-sc0002541-1491911889:8632..9147TCONS_00040733-exon-sc0002541-1491911889:8632..9147Clytia hemisphaericaexon
TCONS_00040733-exon-sc0002541-1510915933:8632..9147TCONS_00040733-exon-sc0002541-1510915933:8632..9147Clytia hemisphaericaexon
TCONS_00040733-exon-sc0002541-1575043694:8632..9147TCONS_00040733-exon-sc0002541-1575043694:8632..9147Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040733-proteinTCONS_00040733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002541supercontigsc0002541:8632..9147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115563	0.368013	0.205627	0	0	0.247654	0.51048	0.561482	0.986586	0.788218	0.490824	0.921067	8.338	5.89123	1.74171	1.6831	0.660697	0.816497	6.06767	5.51463	1.12963	0.677589	1.77295	1.25754	2.52778	2.78658	4.50327	1.38691	4.28713	3.34819
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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