TCONS_00040731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040731
Unique NameTCONS_00040731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040731 ID=TCONS_00040731|Name=TCONS_00040731|organism=Clytia hemisphaerica|type=transcript|length=479bp
CAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACACGAACC
ATAACAAATCTTGATGTCATTTCAACGAAACCTTTTTCACAGAATGCTCC
CACGAGTATCgagagagctttccaaaaatatgtcGATGGGACTTTAGCAA
TCAAAACACACGTTGAATCGAGCAAAGACGCAGATGATCTCCTGAAAGTA
CGATTCCAATACAACGAAAAGGACggctcaaaacaaacaaaatttatttc
acaGAAATTGACCGATTTTATTTTCGACGTTTCACAATCTCTAgatgatt
ttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGgaTGGCGTTTACT
CTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTATCTTAACTTTTACT
CCTTATCAGTATCAAAAAAGGATTCAAACAATACATTACATAGTTGACAC
ATTTTCTGGAGACATTTGGACTATCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00040731-protein

>TCONS_00040731-protein ID=TCONS_00040731-protein|Name=TCONS_00040731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
ENEANAHFLIEAITRTITNLDVISTKPFSQNAPTSIERAFQKYVDGTLAI
KTHVESSKDADDLLKVRFQYNEKDGSKQTKFISQKLTDFIFDVSQSLDDF
NKNEELWQNYFRMAFTLSTSISSLGT
Run BLAST on NCBI

transcript from alignment at sc0002541:1..646+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040731 ID=TCONS_00040731|Name=TCONS_00040731|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at sc0002541:1..646+ (Clytia hemisphaerica)
CAGAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACACGAACC
ATAACAAATCTTGATGTCATTTCAACGAAACCTTTTTCACAGAATGCTCC
CACGAGTATCgagagagctttccaaaaatatgtcGATGGGACTTTAGCAA
TCAAAACACACGTTGAATCGAGCAAAGACGCAGATGATCTCCTGAAAGTA
CGATTCCAATACAACGAAAAGGACggctcaaaacaaacaaaatttatttc
acaGAAATTGACCGATTTTATTTTCGACGTTTCACAATCTCTAgatgatt
ttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGTATAATTTTTCT
gttgaaatattcaattttcaattttcaatgatcTTTATTATTGCAAAGAG
CTCAATGAGAGGATATAAgtcatattttccaaaattaggtGCCCGCTAAT
CCTTTAACCAAATATATTCCAGACTAAAAAAATacattattttttttcct
tcaggaTGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAA
GTATCTTAACTTTTACTCCTTATCAGTATCAAAAAAGGATTCAAACAATA
CATTACATAGTTGACACATTTTCTGGAGACATTTGGACTATCTTCG

Coding sequence (CDS) from alignment at sc0002541:1..646+

>TCONS_00040731 ID=TCONS_00040731|Name=TCONS_00040731|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0002541:1..646+ (Clytia hemisphaerica)
GAAAACGAGGCCAACGCACATTTTCTCATCGAAGCAATCACACGAACCAT
AACAAATCTTGATGTCATTTCAACGAAACCTTTTTCACAGAATGCTCCCA
CGAGTATCgagagagctttccaaaaatatgtcGATGGGACTTTAGCAATC
AAAACACACGTTGAATCGAGCAAAGACGCAGATGATCTCCTGAAAGTACG
ATTCCAATACAACGAAAAGGACggctcaaaacaaacaaaatttatttcac
aGAAATTGACCGATTTTATTTTCGACGTTTCACAATCTCTAgatgatttt
aacaaaaatgaagAGCTATGGCAAAACTATTTCAGgaTGGCGTTTACTCT
TTCAACTTCCATTTCATCTTTGGGAACGTAAGAAAACGAGGCCAACGCAC
ATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCATT
TCAACGAAACCTTTTTCACAGAATGCTCCCACGAGTATCgagagagcttt
ccaaaaatatgtcGATGGGACTTTAGCAATCAAAACACACGTTGAATCGA
GCAAAGACGCAGATGATCTCCTGAAAGTACGATTCCAATACAACGAAAAG
GACggctcaaaacaaacaaaatttatttcacaGAAATTGACCGATTTTAT
TTTCGACGTTTCACAATCTCTAgatgattttaacaaaaatgaagAGCTAT
GGCAAAACTATTTCAGgaTGGCGTTTACTCTTTCAACTTCCATTTCATCT
TTGGGAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024813XLOC_024813Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040731-proteinTCONS_00040731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040731-exon-sc0002541-1491911889:1..337TCONS_00040731-exon-sc0002541-1491911889:1..337Clytia hemisphaericaexon
TCONS_00040731-exon-sc0002541-1510915933:1..337TCONS_00040731-exon-sc0002541-1510915933:1..337Clytia hemisphaericaexon
TCONS_00040731-exon-sc0002541-1575043694:1..337TCONS_00040731-exon-sc0002541-1575043694:1..337Clytia hemisphaericaexon
TCONS_00040731-exon-sc0002541-1491911889:505..646TCONS_00040731-exon-sc0002541-1491911889:505..646Clytia hemisphaericaexon
TCONS_00040731-exon-sc0002541-1510915933:505..646TCONS_00040731-exon-sc0002541-1510915933:505..646Clytia hemisphaericaexon
TCONS_00040731-exon-sc0002541-1575043694:505..646TCONS_00040731-exon-sc0002541-1575043694:505..646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002541supercontigsc0002541:1..646 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147892	0	0	0	0	0.948139	2.66945	1.21848	1.09134	1.59147	0.369933	3.19538	2.94616	0.824755	0.419923	0	0.538019	1.73981	3.57726	0	0.230128	0.430066	0.719511	4.97978	4.71912	0.567892	0.278384	0.660794	0.491807
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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