TCONS_00040730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040730
Unique NameTCONS_00040730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040730 ID=TCONS_00040730|Name=TCONS_00040730|organism=Clytia hemisphaerica|type=transcript|length=985bp
ctaagaatattacaaaaaaacaaattttaagttGCAAATCTTCAAATGAT
GGGTGAACCATCTAATGATACAGACAATGGATTCAATATTGATGATAACA
ATTCTTTATGGGAAGAAATCGATAACCAGACAAATACAGCGTTGGGAAAC
ATTATCATGTGCGGCGAGGCGTGTCAATTTTTGTTTAGTGTAGACACTGT
ATTAAGATCTTCCTTGGAATCTGGCATCACTGGGCATTCAAGCCTCTTCT
CAACTGAAGAAACTCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGT
ATCTTCTTTTGTGCGACATTCCGGCTCTTACAAGAAAACATCTCCATCGT
TCGATTCTTTGAGCATGGTTGTTACAAAGGTGCTATGAAAAGttcGATGC
AAGAGACCATTAACAGTATGATTGAAGACGAAAACTCGCATTACATTGAA
GTTTTCAATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCTCtact
caaaaagaagaaaggaCCCGCGAAAACAAAACGATCCAATTTTCATCGAA
AGTTATTGGAAAGTAAGGAGAGTGTTGGCTTGAACTTGCCGTTCATCGCT
AAAGAACTGAATGTTAGTGGTCAAATTAAATGCACAGGCATCATTGCTAG
AGTCGAACGAAATAATGCTAAAAATGATAAAGACAATTTGACGTTTGATT
ATTCTTCACTATGACGACATGACGATTTTGACAGTTGACGTTTACAATTA
TTTCACGGTAAGCATAAGACTTGACTCGTACATCCAAGAGTTTCTGGGTT
ATTTGACTGAAATATACGATGCTGTTCTATGAGAGATAAAGATGGAGATG
AAAAGACAGGGAAACTTTGAAGTACTTTTTGAAACTCTGTTTTAAAATGC
ATGTGCTAAACATTTGCTAAACTCGATTTTCCTCCGAAATGGTACATAAT
AACAAAATAGAAACTGCCAAAATTTGTTTTCTGAC
Run BLAST on NCBI

protein sequence of TCONS_00040730-protein

>TCONS_00040730-protein ID=TCONS_00040730-protein|Name=TCONS_00040730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MMGEPSNDTDNGFNIDDNNSLWEEIDNQTNTALGNIIMCGEACQFLFSVD
TVLRSSLESGITGHSSLFSTEETLLDIASSGEAEGIFFCATFRLLQENIS
IVRFFEHGCYKGAMKSSMQETINSMIEDENSHYIEVFNDYDVENKLKRES
LLKKKKGPAKTKRSNFHRKLLESKESVGLNLPFIAKELNVSGQIKCTGII
ARVERNNAKNDKDNLTFDYSSL
Run BLAST on NCBI

transcript from alignment at sc0002540:11567..14755+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040730 ID=TCONS_00040730|Name=TCONS_00040730|organism=Clytia hemisphaerica|type=transcript|length=3189bp|location=Sequence derived from alignment at sc0002540:11567..14755+ (Clytia hemisphaerica)
ctaagaatattacaaaaaaacaaattttaagttGCAAATCTTCAAATGAT
GGGTGAACCATCTAATGATACAGACAATGGATTCAATATTGATGATAACA
ATTCTTTATGGGAAGGTATACGTTACCTAgctttagtttttattttcata
aatttatcATTGATCCTCCCCCCCCTTTAATTTAAGggggacttgaaatt
ttgagataaaCTTCAAGAGGTAataacttcaaaacttttgaaataagtCA
CAAGGGTGGTCAGCTTTCTTTAATTACTAGTACTTACTTTATTGGATATC
TCAGCTGACGATCTAAtaaagactgtttaacaattgacgtTATACCTTCT
TTCTTATTGTTCAACCTCATGCCTTGTGAGACTATTCATTAAAGTTCTTT
AATTGTATTTTCAGAAATCGATAACCAGACAAATACAGCGTTGGGAAACA
TTATCATGTGCGGCGAGGCGTGTCAATTTTTGTTTAGTGTAGACACTGTA
TTAAGATCTTCCTTGGAATCTGGCATCACTGGGCATTCAAGCCTCTTCTC
AACTGAAGAAACTCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGTA
TCTTCTTTTGTGCGACATTCCGGCTCTTACAAGAAAACATCTCCATCGTT
CGATTCTTTGAGCATGGTTGTTACAAAGGTGCTATGAAAAGGTTAAATGC
ATAATACATTTTTTGTGTAAATTGTTGTCCTCATTGCATACATATTCTGC
TTTTTATCTTTATTCACAAGTTAAAGAATTACATTTCGTTTATTGTGCGA
GCCTTGCAGATTTCTTTGTCGAATCGAATCTTACTTATTATTGTTATGAT
CTGTAAGTGGCTACATCCTAAGAACTTTACCGTCTATGACCtctcatttt
ttaatttttcagttcGATGCAAGAGACCATTAACAGTATGATTGAAGACG
AAAACTCGCATTACATTGAAGTTTTCAATGATTATGACGTGGAGAACAAA
TTGAAGCGGGAATCTCtactcaaaaagaagaaaggtaAAAAGTCAAGACC
ATATCCTTCTCTCccttgaaaaatttgattaagtAGAAAAAGTCTGCCAA
TACTTTTCAGCAAATAAAGTAAACTATTTCAATGTTTTCTGTctttttca
cgatttttaggaCCCGCGAAAACAAAACGATCCAATTTTCATCGAAAGTT
ATTGGAAAGTAAGGAGAGTGTTGGCTTGAACTTGCCGTTCATCGCTAAAG
AACTGAATGTTAGTGGTCAAATTAAATGCACAGGCATCATTGCTAGAGTC
GAACGAAATAATGCTAAAAATGATAAAGACAAGTAAGTAAAGTTTCCAGA
CGTTTCCTTTGACTAAAATGACAGAGACATAACAACTTTGACGAACTTTA
GATNGTTATTAAGTTATTAAGTTATTTTAACACAATTATGCGATTTCATT
GAAAGGAATTCACTTTACCGTCCAAATCAATCTGGATTTCGGAAAGGGCA
CACCACAACAACGCTACTCTTAAAACTACGTGATGATATAATCAAAGCTa
tgaataaaagtgaaattacaCTATCAATTCTTATCGACTACTCCAAGGCA
TTCGATACGATCGACCATTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTAgtgctttttattttgatatttatgtTTAGGGGGAAGAACAATTTTGT
ATGAAATTGAACCTaataaatgataataataataataataataataatta
aatgTACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATGAT
AAAGACAAGTAAGTAAAGTTTCCAGACGTTTCCTTTGACTAAAATGACAG
AGACATAACAACTTTGACGAACTTTAGATGTTCACGATacgtaattttat
tttatttaatttaatttaatcttaTAGCAAGCCCTTAGTCTTTTTGTAGA
TGGTGACTTTCTTTCTTCGGCACTGATGATGTTTTTAAATTACTTTACAT
AAATCTTAATATAGTTTGACGTTTGATTATTCTTCACTATGACGACATGA
CGATTTTGACAGTTGACGTTTACAATTATTTCACGGTAAGCATAAGACTT
GACTCGTACATCCAAGAGTTTCTGGGTTATTTGACTGAAATATACGATGC
TGTTCTATGAGAGATAAAGATGGAGATGAAAAGACAGGGAAACTTTGAAG
TACTTTTTGAAACTCTGTTTTAAAATGCATGTGCTAAACATTTGCTAAAC
TCGATTTTCCTCCGAAATGGTACATAANCTTTTTAAAACTCTGTTTTAAA
ATGGATGTGCTAAACATTTGCTAAACTCGATTTTCCTCCGGAATGGTACA
TAATAACAAAATAGAAACTGCCAAAATTTGTTTTCTGAC

Coding sequence (CDS) from alignment at sc0002540:11567..14755+

>TCONS_00040730 ID=TCONS_00040730|Name=TCONS_00040730|organism=Clytia hemisphaerica|type=CDS|length=4014bp|location=Sequence derived from alignment at sc0002540:11567..14755+ (Clytia hemisphaerica)
ATGATGGGTGAACCATCTAATGATACAGACAATGGATTCAATATTGATGA
TAACAATTCTTTATGGGAAGAAATCGATAACCAGACAAATACAGCGTTGG
GAAACATTATCATGTGCGGCGAGGCGTGTCAATTTTTGTTTAGTGTAGAC
ACTGTATTAAGATCTTCCTTGGAATCTGGCATCACTGGGCATTCAAGCCT
CTTCTCAACTGAAGAAACTCTCCTTGACATTGCCAGCAGTGGTGAGGCAG
AGGGTATCTTCTTTTGTGCGACATTCCGGCTCTTACAAGAAAACATCTCC
ATCGTTCGATTCTTTGAGCATGGTTGTTACAAAGGTGCTATGAAAAGttc
GATGCAAGAGACCATTAACAGTATGATTGAAGACGAAAACTCGCATTACA
TTGAAGTTTTCAATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCT
CtactcaaaaagaagaaaggaCCCGCGAAAACAAAACGATCCAATTTTCA
TCGAAAGTTATTGGAAAGTAAGGAGAGTGTTGGCTTGAACTTGCCGTTCA
TCGCTAAAGAACTGAATGTTAGTGGTCAAATTAAATGCACAGGCATCATT
GCTAGAGTCGAACGAAATAATGCTAAAAATGATAAAGACAATTTGACGTT
TGATTATTCTTCACTATGAATGATGGGTGAACCATCTAATGATACAGACA
ATGGATTCAATATTGATGATAACAATTCTTTATGGGAAGAAATCGATAAC
CAGACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGTCA
ATTTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAATCTGGCA
TCACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACATT
GCCAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGGCT
CTTACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTACA
AAGGTGCTATGAAAAGttcGATGCAAGAGACCATTAACAGTATGATTGAA
GACGAAAACTCGCATTACATTGAAGTTTTCAATGATTATGACGTGGAGAA
CAAATTGAAGCGGGAATCTCtactcaaaaagaagaaaggaCCCGCGAAAA
CAAAACGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTGTT
GGCTTGAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAAAT
TAAATGCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATG
ATAAAGACAATTTGACGTTTGATTATTCTTCACTATGAATGATGGGTGAA
CCATCTAATGATACAGACAATGGATTCAATATTGATGATAACAATTCTTT
ATGGGAAGAAATCGATAACCAGACAAATACAGCGTTGGGAAACATTATCA
TGTGCGGCGAGGCGTGTCAATTTTTGTTTAGTGTAGACACTGTATTAAGA
TCTTCCTTGGAATCTGGCATCACTGGGCATTCAAGCCTCTTCTCAACTGA
AGAAACTCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGTATCTTCT
TTTGTGCGACATTCCGGCTCTTACAAGAAAACATCTCCATCGTTCGATTC
TTTGAGCATGGTTGTTACAAAGGTGCTATGAAAAGttcGATGCAAGAGAC
CATTAACAGTATGATTGAAGACGAAAACTCGCATTACATTGAAGTTTTCA
ATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCTCtactcaaaaag
aagaaaggaCCCGCGAAAACAAAACGATCCAATTTTCATCGAAAGTTATT
GGAAAGTAAGGAGAGTGTTGGCTTGAACTTGCCGTTCATCGCTAAAGAAC
TGAATGTTAGTGGTCAAATTAAATGCACAGGCATCATTGCTAGAGTCGAA
CGAAATAATGCTAAAAATGATAAAGACAATTTGACGTTTGATTATTCTTC
ACTATGAATGATGGGTGAACCATCTAATGATACAGACAATGGATTCAATA
TTGATGATAACAATTCTTTATGGGAAGAAATCGATAACCAGACAAATACA
GCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGTCAATTTTTGTTTAG
TGTAGACACTGTATTAAGATCTTCCTTGGAATCTGGCATCACTGGGCATT
CAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACATTGCCAGCAGTGGT
GAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGGCTCTTACAAGAAAA
CATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTACAAAGGTGCTATGA
AAAGttcGATGCAAGAGACCATTAACAGTATGATTGAAGACGAAAACTCG
CATTACATTGAAGTTTTCAATGATTATGACGTGGAGAACAAATTGAAGCG
GGAATCTCtactcaaaaagaagaaaggaCCCGCGAAAACAAAACGATCCA
ATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTGTTGGCTTGAACTTG
CCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAAATTAAATGCACAGG
CATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATGATAAAGACAATT
TGACGTTTGATTATTCTTCACTATGAATGATGGGTGAACCATCTAATGAT
ACAGACAATGGATTCAATATTGATGATAACAATTCTTTATGGGAAGAAAT
CGATAACCAGACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGG
CGTGTCAATTTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAA
TCTGGCATCACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCT
TGACATTGCCAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACAT
TCCGGCTCTTACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGT
TGTTACAAAGGTGCTATGAAAAGttcGATGCAAGAGACCATTAACAGTAT
GATTGAAGACGAAAACTCGCATTACATTGAAGTTTTCAATGATTATGACG
TGGAGAACAAATTGAAGCGGGAATCTCtactcaaaaagaagaaaggaCCC
GCGAAAACAAAACGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGA
GAGTGTTGGCTTGAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTG
GTCAAATTAAATGCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCT
AAAAATGATAAAGACAATTTGACGTTTGATTATTCTTCACTATGAATGAT
GGGTGAACCATCTAATGATACAGACAATGGATTCAATATTGATGATAACA
ATTCTTTATGGGAAGAAATCGATAACCAGACAAATACAGCGTTGGGAAAC
ATTATCATGTGCGGCGAGGCGTGTCAATTTTTGTTTAGTGTAGACACTGT
ATTAAGATCTTCCTTGGAATCTGGCATCACTGGGCATTCAAGCCTCTTCT
CAACTGAAGAAACTCTCCTTGACATTGCCAGCAGTGGTGAGGCAGAGGGT
ATCTTCTTTTGTGCGACATTCCGGCTCTTACAAGAAAACATCTCCATCGT
TCGATTCTTTGAGCATGGTTGTTACAAAGGTGCTATGAAAAGttcGATGC
AAGAGACCATTAACAGTATGATTGAAGACGAAAACTCGCATTACATTGAA
GTTTTCAATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCTCtact
caaaaagaagaaaggaCCCGCGAAAACAAAACGATCCAATTTTCATCGAA
AGTTATTGGAAAGTAAGGAGAGTGTTGGCTTGAACTTGCCGTTCATCGCT
AAAGAACTGAATGTTAGTGGTCAAATTAAATGCACAGGCATCATTGCTAG
AGTCGAACGAAATAATGCTAAAAATGATAAAGACAATTTGACGTTTGATT
ATTCTTCACTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024812XLOC_024812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040730-proteinTCONS_00040730-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040730-exon-sc0002540-1491911889:11567..11681TCONS_00040730-exon-sc0002540-1491911889:11567..11681Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:11567..11681TCONS_00040730-exon-sc0002540-1510915933:11567..11681Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:11567..11681TCONS_00040730-exon-sc0002540-1575043694:11567..11681Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:11981..12257TCONS_00040730-exon-sc0002540-1491911889:11981..12257Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:11981..12257TCONS_00040730-exon-sc0002540-1510915933:11981..12257Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:11981..12257TCONS_00040730-exon-sc0002540-1575043694:11981..12257Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:12479..12600TCONS_00040730-exon-sc0002540-1491911889:12479..12600Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:12479..12600TCONS_00040730-exon-sc0002540-1510915933:12479..12600Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:12479..12600TCONS_00040730-exon-sc0002540-1575043694:12479..12600Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:12727..12849TCONS_00040730-exon-sc0002540-1491911889:12727..12849Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:12727..12849TCONS_00040730-exon-sc0002540-1510915933:12727..12849Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:12727..12849TCONS_00040730-exon-sc0002540-1575043694:12727..12849Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:14126..14174TCONS_00040730-exon-sc0002540-1491911889:14126..14174Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:14126..14174TCONS_00040730-exon-sc0002540-1510915933:14126..14174Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:14126..14174TCONS_00040730-exon-sc0002540-1575043694:14126..14174Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:14381..14639TCONS_00040730-exon-sc0002540-1491911889:14381..14639Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:14381..14639TCONS_00040730-exon-sc0002540-1510915933:14381..14639Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:14381..14639TCONS_00040730-exon-sc0002540-1575043694:14381..14639Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1491911889:14716..14755TCONS_00040730-exon-sc0002540-1491911889:14716..14755Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1510915933:14716..14755TCONS_00040730-exon-sc0002540-1510915933:14716..14755Clytia hemisphaericaexon
TCONS_00040730-exon-sc0002540-1575043694:14716..14755TCONS_00040730-exon-sc0002540-1575043694:14716..14755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002540supercontigsc0002540:11567..14755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.877824	0	0	0	0	0.619971	0	0	2.95251	4.40354	3.70156	2.54723	4.28827	4.94389	1.19029	3.42792	1.37923	4.34474	0.617347	1.32032	1.20803	0.324967	1.07119	2.29846	0.421908	0.983682	0	2.04947e-08	1.63868	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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