TCONS_00040725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040725
Unique NameTCONS_00040725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040725 ID=TCONS_00040725|Name=TCONS_00040725|organism=Clytia hemisphaerica|type=transcript|length=297bp
aTTAAGTATTACCAACTTtacttttgttaatatttttgttgccCTAAGaa
ccgattttgaaaaatgtaagatTCTTGCTGTTACTTGCATTTAGCATCTT
CTTGCGAGGCCGTATAATATATCAATTTTAAGTATAGGCATCGTGTCAAC
AAATGTGCAAAACTTTGGTTATCCTATCcagatttttttattataatggC
AAATGATATCTCAATTTAATCGGCAACCACGTCAGCAAGATTCCCTAAAC
TATCAAGGAACTTCAATCAAAACGTTTTTATTGAAGTCCTTCGCACG
Run BLAST on NCBI

transcript from alignment at sc0002539:4264..4560

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040725 ID=TCONS_00040725|Name=TCONS_00040725|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0002539:4264..4560 (Clytia hemisphaerica)
CGTGCGAAGGACTTCAATAAAAACGTTTTGATTGAAGTTCCTTGATAGTT
TAGGGAATCTTGCTGACGTGGTTGCCGATTAAATTGAGATATCATTTGcc
attataataaaaaaatctgGATAGGATAACCAAAGTTTTGCACATTTGTT
GACACGATGCCTATACTTAAAATTGATATATTATACGGCCTCGCAAGAAG
ATGCTAAATGCAAGTAACAGCAAGAatcttacatttttcaaaatcggttC
TTAGggcaacaaaaatattaacaaaagtaAAGTTGGTAATACTTAAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024810XLOC_024810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040725-exon-sc0002539-1491911889:4264..4560TCONS_00040725-exon-sc0002539-1491911889:4264..4560Clytia hemisphaericaexon
TCONS_00040725-exon-sc0002539-1510915933:4264..4560TCONS_00040725-exon-sc0002539-1510915933:4264..4560Clytia hemisphaericaexon
TCONS_00040725-exon-sc0002539-1575043694:4264..4560TCONS_00040725-exon-sc0002539-1575043694:4264..4560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002539supercontigsc0002539:4264..4560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.455592	0	0	0	1.03464	0.968616	0.339075	0	0.815324	0.803943	0	4.16871	0	0	0	0	0.427736	0	0	1.13856	0	0	0	0.771125	0.551739	0	0	0.910044
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top