TCONS_00040724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040724
Unique NameTCONS_00040724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040724 ID=TCONS_00040724|Name=TCONS_00040724|organism=Clytia hemisphaerica|type=transcript|length=1270bp
CAACGAAAAAGAAGATTGCCCTTGCTGTCAGTGGAACAGCAACAGGTCCA
CTTATATTACATGACCGTCTCTTTGAGAAAGCTGGGGGACTCATGAACAG
TAAAAGTGATGCATCACTTCCAACAATCAAAGGAATAAAATACCAGCGAT
CCCTTCAAAGAAAGAACTTATTGACAGAACAAGATCCTGTCGCAGAGTTC
ATCCGGTACGGCTTGCATGAAAAGAATTTCATACGAAACTTCGAAGTGCT
ACCTTCAATTCGTGCTGTACTCGCAGCTGACAACCAGATAAACGACATAA
TCAATTTCTGTACGGATCCCTCGGAATTTACCATTCTGACCATTGACACC
ACTTTCAACATATGCGAGGGGCTTTACGTGACTCCCCTTACCTACAAACA
CCTGCGCCTGTTAGAGAAGGAAAGTAGGAGAAACCCTGTTCTTCCAGGTC
CAGCCATCATTCATTCTTCCCTGGACGCTAGCGTCTTTGAGTACTTTGGC
CAGAAGCTTGTGAGCATCAACCCAAAAATGAAGGAGGTGCTAGCTGTTGG
TTCCGACCGAGACAAGGCAATTGACAATGGATTTATGTCATCATTTCCCA
TCGGAAGCCTCTTATCATGCAAAAGACATGTCCATGGGAATGTTACCTCA
AAACTAACACAACTTGGCATAGttgatcaaaacaaatttcttgaaGAAAT
CTTTGGAAACGATGAAACACGAGTTAAGGGCGTGGTGGATGCAGAAAGCG
AGGAagaatttgatcaaattttgatGTCGTTAGTCGAAGCTTGGAACGAT
CGGGAAGTGAAAGTACGCAAATTGAAATCTGAGAAAGACGCAAAATTTGC
TGACTATTTTGTGAAGAATGTATCTTTGGATATGAAGCGGAAAATGATTC
TTCCAGTCCGCCGTCAATTGATGCAAAACGGGGACAACTTTTTTTACAAT
AATGCTAGCGAGAGCATTAACGATCGCCTCAAGAAAATAGTGCAGCAAAG
AAAAGCAGAAATCACAGCATCTGGCCAACCCCAAAGGAAGTGTACATGGG
CAGAATTCTCCAGTCTCTATAAAGACTATGTCGAAATGATTCAAAGAAAC
ATTCACCGGAGTATTGTTGGTAAAGGCACGTACGTTCTCTCTAACGAGGT
AGTACAATTTGGACTTGATCTACACATATTTCGAAAGGAGAGTACAGAGG
AGCAAAATCTGCGAATCAACGTAATCGATTCAACTCACAAGGTGAAAGGC
CCTCCGTCATCcgcattttc
Run BLAST on NCBI

protein sequence of TCONS_00040724-protein

>TCONS_00040724-protein ID=TCONS_00040724-protein|Name=TCONS_00040724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
TKKKIALAVSGTATGPLILHDRLFEKAGGLMNSKSDASLPTIKGIKYQRS
LQRKNLLTEQDPVAEFIRYGLHEKNFIRNFEVLPSIRAVLAADNQINDII
NFCTDPSEFTILTIDTTFNICEGLYVTPLTYKHLRLLEKESRRNPVLPGP
AIIHSSLDASVFEYFGQKLVSINPKMKEVLAVGSDRDKAIDNGFMSSFPI
GSLLSCKRHVHGNVTSKLTQLGIVDQNKFLEEIFGNDETRVKGVVDAESE
EEFDQILMSLVEAWNDREVKVRKLKSEKDAKFADYFVKNVSLDMKRKMIL
PVRRQLMQNGDNFFYNNASESINDRLKKIVQQRKAEITASGQPQRKCTWA
EFSSLYKDYVEMIQRNIHRSIVGKGTYVLSNEVVQFGLDLHIFRKESTEE
QNLRINVIDSTHKVKGPPSSAF
Run BLAST on NCBI

transcript from alignment at sc0002539:5695..7828-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040724 ID=TCONS_00040724|Name=TCONS_00040724|organism=Clytia hemisphaerica|type=transcript|length=2134bp|location=Sequence derived from alignment at sc0002539:5695..7828- (Clytia hemisphaerica)
CAACGAAAAAGAAGATTGCCCTTGCTGTCAGTGGAACAGCAACAGGTCCA
CTTATATTACATGACCGTCTCTTTGAGAAAGCTGGGGGACTCATGAACAG
TAAAAGTGATGCATCACTTCCAACAATCAAAGGAATAAAATACCAGCGAT
CCCTTCAAAGAAAGAACTTATTGACAGAACAAGATCCTGTCGCAGAGTTC
ATCCGGTACGGCTTGCATGAAAAGAATTTCATACGAAACTTCGAAGTGCT
ACCTTCAATTCGTGCTGTACTCGCAGCTGACAACCAGATAAACGACATAA
TCAATTTCTGTACGGATCCCTCGGAATTTACCATTCTGACCATTGACACC
ACTTTCAACATATGCGAGGGGCTTTACGTGACTCCCCTTACCTACAAACA
CCTGCGCCTGTTAGAGAAGGAAAGTAGGAGAAACCCTGTTCTTCCAGGTC
CAGCCATCATTCATTCTTCCCTGGACGCTAGCGTCTTTGAGTACTTTGGC
CAGAAGCTTGTGAGCATCAACCCAAAAATGAAGGAGGTGCTAGCTGTTGG
TTCCGACCGAGACAAGGCAATTGACAATGGATTTATGTCATCATTTCCCA
TCGGAAGCCTCTTATCATGCAAAAGACATGTCCATGGGAATGTTACCTCA
AAACTAACACAACTTGGCATAGTTGATCAAAACAAATTTCTTGAAGAAAT
CTTTGGAAACGATGAAACACGAGTTAAGGTACGTATCATGTTTATTCAAT
TTATATTTTGTACAAATCACAATGGTGATCTAAATGAAACCATTTTCTGG
ATCTACTGATGTTGGCCCCATTATCACGATAAGCACCAATAACTGAATCT
CTATTTTCGAAATATCAAATGAAAATTAAAGCTCAGCATTAAGACAAAGG
AAAGCTAACAGGCAGGTACAAAGGAAAGACACCCCTACAATTTTAAACTT
AATCATGAGTGTTGTAAAGTGCTTTAGGACGGGGAGTTTTTTTATACGTT
GCGATAAAAATTATCACGTCCTAGTTAGACAAACAAACTGAAATACACTG
GACTTTAGCTCATCTCTCCTAATTTCCTTACATGCCATGGTTGACCCGAG
CATGTCTGAGCTGGTCTGAGTATGTTTTAAGCAGTGGAATTTGCTTCCAC
AAGGCTGTGAAAGTCAGACGTCCTAGCCACACGACCACGCATTTCCTTTT
ATAGTAGTAACTGAAGGTTAATTACACTATTGTTTTAGGGCGTGGTGGAT
GCAGAAAGCGAGGAAGAATTTGATCAAATTTTGATGTCGTTAGTCGAAGC
TTGGAACGATCGGGAAGTGAAAGTACGCAAATTGAAATCTGAGAAAGACG
CAAAATTTGCTGACTATTTTGTGAAGAATGTATCTTTGGATATGAAGCGG
AAAATGATTCTTCCAGTCCGCCGTCAATTGATGCAAAACGGGGACAACTT
TTTTTACAATAATGCTAGCGAGAGCATTAACGATCGCCTCAAGAAAATAG
TGCAGCAAAGAAAAGCAGAAATCACAGCATCTGGCCAACCCCAAAGGAAG
TGTACATGGGCAGAATTCTCCAGTCTCTATAAAGTAAGATATTGTATGAT
ACAATACTAGTAAATTAACGGTTTTTAAATATCAAGATATTCTGAAATGA
TGCGCTCATAGCAGTTATTATGTTTAACTATTAAATTTAACTTCAACTTC
AGGCTACTTAAATCAGATTAATTATTGCGAGATTAAATTTTGCGATTTTG
CTATTTTTTTTTTGCCTTTTTCGCCAAAGCAAGATCGCAAAAACCACTGT
ACACCTACACTGAGCTCAATGGCAATGTCAGAAAGCTAATTTTGGGATTT
GTAGAGGTTCGTAGATAGTACAGGTTAGAGTAATGTAGTTAATATTCTAA
TTGTTGAACTCTCAATGGACTCTTTTTGTTTTACTAGGACTATGTCGAAA
TGATTCAAAGAAACATTCACCGGAGTATTGTTGGTAAAGGCACGTACGTT
CTCTCTAACGAGGTAGTACAATTTGGACTTGATCTACACATATTTCGAAA
GGAGAGTACAGAGGAGCAAAATCTGCGAATCAACGTAATCGATTCAACTC
ACAAGGTGAAAGGCCCTCCGTCATCCGCATTTTC

Coding sequence (CDS) from alignment at sc0002539:5695..7828-

>TCONS_00040724 ID=TCONS_00040724|Name=TCONS_00040724|organism=Clytia hemisphaerica|type=CDS|length=3798bp|location=Sequence derived from alignment at sc0002539:5695..7828- (Clytia hemisphaerica)
GACTATGTCGAAATGATTCAAAGAAACATTCACCGGAGTATTGTTGGTAA
AGGCACGTACGTTCTCTCTAACGAGGTAGTACAATTTGGACTTGATCTAC
ACATATTTCGAAAGGAGAGTACAGAGGAGCAAAATCTGCGAATCAACGTA
ATCGATTCAACTCACAAGGTGAAAGGCCCTCCGTCATCCGCATTTGGCGT
GGTGGATGCAGAAAGCGAGGAAGAATTTGATCAAATTTTGATGTCGTTAG
TCGAAGCTTGGAACGATCGGGAAGTGAAAGTACGCAAATTGAAATCTGAG
AAAGACGCAAAATTTGCTGACTATTTTGTGAAGAATGTATCTTTGGATAT
GAAGCGGAAAATGATTCTTCCAGTCCGCCGTCAATTGATGCAAAACGGGG
ACAACTTTTTTTACAATAATGCTAGCGAGAGCATTAACGATCGCCTCAAG
AAAATAGTGCAGCAAAGAAAAGCAGAAATCACAGCATCTGGCCAACCCCA
AAGGAAGTGTACATGGGCAGAATTCTCCAGTCTCTATAAAACGAAAAAGA
AGATTGCCCTTGCTGTCAGTGGAACAGCAACAGGTCCACTTATATTACAT
GACCGTCTCTTTGAGAAAGCTGGGGGACTCATGAACAGTAAAAGTGATGC
ATCACTTCCAACAATCAAAGGAATAAAATACCAGCGATCCCTTCAAAGAA
AGAACTTATTGACAGAACAAGATCCTGTCGCAGAGTTCATCCGGTACGGC
TTGCATGAAAAGAATTTCATACGAAACTTCGAAGTGCTACCTTCAATTCG
TGCTGTACTCGCAGCTGACAACCAGATAAACGACATAATCAATTTCTGTA
CGGATCCCTCGGAATTTACCATTCTGACCATTGACACCACTTTCAACATA
TGCGAGGGGCTTTACGTGACTCCCCTTACCTACAAACACCTGCGCCTGTT
AGAGAAGGAAAGTAGGAGAAACCCTGTTCTTCCAGGTCCAGCCATCATTC
ATTCTTCCCTGGACGCTAGCGTCTTTGAGTACTTTGGCCAGAAGCTTGTG
AGCATCAACCCAAAAATGAAGGAGGTGCTAGCTGTTGGTTCCGACCGAGA
CAAGGCAATTGACAATGGATTTATGTCATCATTTCCCATCGGAAGCCTCT
TATCATGCAAAAGACATGTCCATGGGAATGTTACCTCAAAACTAACACAA
CTTGGCATAGTTGATCAAAACAAATTTCTTGAAGAAATCTTTGGAAACGA
TGAAACACGAGTTAAGGACTATGTCGAAATGATTCAAAGAAACATTCACC
GGAGTATTGTTGGTAAAGGCACGTACGTTCTCTCTAACGAGGTAGTACAA
TTTGGACTTGATCTACACATATTTCGAAAGGAGAGTACAGAGGAGCAAAA
TCTGCGAATCAACGTAATCGATTCAACTCACAAGGTGAAAGGCCCTCCGT
CATCCGCATTTGGCGTGGTGGATGCAGAAAGCGAGGAAGAATTTGATCAA
ATTTTGATGTCGTTAGTCGAAGCTTGGAACGATCGGGAAGTGAAAGTACG
CAAATTGAAATCTGAGAAAGACGCAAAATTTGCTGACTATTTTGTGAAGA
ATGTATCTTTGGATATGAAGCGGAAAATGATTCTTCCAGTCCGCCGTCAA
TTGATGCAAAACGGGGACAACTTTTTTTACAATAATGCTAGCGAGAGCAT
TAACGATCGCCTCAAGAAAATAGTGCAGCAAAGAAAAGCAGAAATCACAG
CATCTGGCCAACCCCAAAGGAAGTGTACATGGGCAGAATTCTCCAGTCTC
TATAAAACGAAAAAGAAGATTGCCCTTGCTGTCAGTGGAACAGCAACAGG
TCCACTTATATTACATGACCGTCTCTTTGAGAAAGCTGGGGGACTCATGA
ACAGTAAAAGTGATGCATCACTTCCAACAATCAAAGGAATAAAATACCAG
CGATCCCTTCAAAGAAAGAACTTATTGACAGAACAAGATCCTGTCGCAGA
GTTCATCCGGTACGGCTTGCATGAAAAGAATTTCATACGAAACTTCGAAG
TGCTACCTTCAATTCGTGCTGTACTCGCAGCTGACAACCAGATAAACGAC
ATAATCAATTTCTGTACGGATCCCTCGGAATTTACCATTCTGACCATTGA
CACCACTTTCAACATATGCGAGGGGCTTTACGTGACTCCCCTTACCTACA
AACACCTGCGCCTGTTAGAGAAGGAAAGTAGGAGAAACCCTGTTCTTCCA
GGTCCAGCCATCATTCATTCTTCCCTGGACGCTAGCGTCTTTGAGTACTT
TGGCCAGAAGCTTGTGAGCATCAACCCAAAAATGAAGGAGGTGCTAGCTG
TTGGTTCCGACCGAGACAAGGCAATTGACAATGGATTTATGTCATCATTT
CCCATCGGAAGCCTCTTATCATGCAAAAGACATGTCCATGGGAATGTTAC
CTCAAAACTAACACAACTTGGCATAGTTGATCAAAACAAATTTCTTGAAG
AAATCTTTGGAAACGATGAAACACGAGTTAAGGACTATGTCGAAATGATT
CAAAGAAACATTCACCGGAGTATTGTTGGTAAAGGCACGTACGTTCTCTC
TAACGAGGTAGTACAATTTGGACTTGATCTACACATATTTCGAAAGGAGA
GTACAGAGGAGCAAAATCTGCGAATCAACGTAATCGATTCAACTCACAAG
GTGAAAGGCCCTCCGTCATCCGCATTTGGCGTGGTGGATGCAGAAAGCGA
GGAAGAATTTGATCAAATTTTGATGTCGTTAGTCGAAGCTTGGAACGATC
GGGAAGTGAAAGTACGCAAATTGAAATCTGAGAAAGACGCAAAATTTGCT
GACTATTTTGTGAAGAATGTATCTTTGGATATGAAGCGGAAAATGATTCT
TCCAGTCCGCCGTCAATTGATGCAAAACGGGGACAACTTTTTTTACAATA
ATGCTAGCGAGAGCATTAACGATCGCCTCAAGAAAATAGTGCAGCAAAGA
AAAGCAGAAATCACAGCATCTGGCCAACCCCAAAGGAAGTGTACATGGGC
AGAATTCTCCAGTCTCTATAAAACGAAAAAGAAGATTGCCCTTGCTGTCA
GTGGAACAGCAACAGGTCCACTTATATTACATGACCGTCTCTTTGAGAAA
GCTGGGGGACTCATGAACAGTAAAAGTGATGCATCACTTCCAACAATCAA
AGGAATAAAATACCAGCGATCCCTTCAAAGAAAGAACTTATTGACAGAAC
AAGATCCTGTCGCAGAGTTCATCCGGTACGGCTTGCATGAAAAGAATTTC
ATACGAAACTTCGAAGTGCTACCTTCAATTCGTGCTGTACTCGCAGCTGA
CAACCAGATAAACGACATAATCAATTTCTGTACGGATCCCTCGGAATTTA
CCATTCTGACCATTGACACCACTTTCAACATATGCGAGGGGCTTTACGTG
ACTCCCCTTACCTACAAACACCTGCGCCTGTTAGAGAAGGAAAGTAGGAG
AAACCCTGTTCTTCCAGGTCCAGCCATCATTCATTCTTCCCTGGACGCTA
GCGTCTTTGAGTACTTTGGCCAGAAGCTTGTGAGCATCAACCCAAAAATG
AAGGAGGTGCTAGCTGTTGGTTCCGACCGAGACAAGGCAATTGACAATGG
ATTTATGTCATCATTTCCCATCGGAAGCCTCTTATCATGCAAAAGACATG
TCCATGGGAATGTTACCTCAAAACTAACACAACTTGGCATAGTTGATCAA
AACAAATTTCTTGAAGAAATCTTTGGAAACGATGAAACACGAGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024809XLOC_024809Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040724-proteinTCONS_00040724-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040724-exon-sc0002539-1575043694:7101..7828TCONS_00040724-exon-sc0002539-1575043694:7101..7828Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1575043694:6246..6590TCONS_00040724-exon-sc0002539-1575043694:6246..6590Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1575043694:5695..5891TCONS_00040724-exon-sc0002539-1575043694:5695..5891Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1510915933:7101..7828TCONS_00040724-exon-sc0002539-1510915933:7101..7828Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1510915933:6246..6590TCONS_00040724-exon-sc0002539-1510915933:6246..6590Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1510915933:5695..5891TCONS_00040724-exon-sc0002539-1510915933:5695..5891Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1491911889:7101..7828TCONS_00040724-exon-sc0002539-1491911889:7101..7828Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1491911889:6246..6590TCONS_00040724-exon-sc0002539-1491911889:6246..6590Clytia hemisphaericaexon
TCONS_00040724-exon-sc0002539-1491911889:5695..5891TCONS_00040724-exon-sc0002539-1491911889:5695..5891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002539supercontigsc0002539:5695..7828 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267504	0.293466	0.0378602	0.0370403	0.992047	0.997728	0.902787	1.28789	0.591729	1.3612	1.38897	1.11348	1.02297	0.831419	0.0949361	0.101881	0.351425	0.257285	0.675362	0.446348	0.129319	0.331156	0.230036	0.278848	0.646217	0.736937	0.779453	0.733988	0.779386	0.340316
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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