TCONS_00040723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040723
Unique NameTCONS_00040723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040723 ID=TCONS_00040723|Name=TCONS_00040723|organism=Clytia hemisphaerica|type=transcript|length=454bp
CTAGTATCTGGAGATATTTGACCAGGACGAACTCAACTCAAAATCGAAAA
CATTGCAAGTGAAAATTGCACGGAACTTTCATGGCCTCAGTTGAGAAAAC
AGAATCAAAAATGAACACAAAGAGTGGGATTGTTATAAGTTTATTGCAAG
ATGATTATTTTAAACGCCATAacaaatattgtatttttataaataatgga
tttttcgtttttttaaatTACGTTTAATCTAATATAAAATGTCTATACAA
ATACTTATTGCTGTAAAATGACCAAGGCTTAATTGGGCAATGTGCCACAG
GTCCCTGGCGTATTTCCTCAAATAAGCGCCGTGGTGCCCCGTATATTTAC
AAGATTTGGGATGTGGCCCCAATCGATTTCAGTTCCTTAATATGCCTTTa
cgattctgatagcgctcacattttcaaaatttaaattgatctgcaataat
ttta
Run BLAST on NCBI

transcript from alignment at sc0002537:18766..19219

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040723 ID=TCONS_00040723|Name=TCONS_00040723|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at sc0002537:18766..19219 (Clytia hemisphaerica)
taaaattattgcagatcaatttaaattttgaaaatgtgagcgctatcaga
atcgtAAAGGCATATTAAGGAACTGAAATCGATTGGGGCCACATCCCAAA
TCTTGTAAATATACGGGGCACCACGGCGCTTATTTGAGGAAATACGCCAG
GGACCTGTGGCACATTGCCCAATTAAGCCTTGGTCATTTTACAGCAATAA
GTATTTGTATAGACATTTTATATTAGATTAAACGTAatttaaaaaaacga
aaaatccattatttataaaaatacaatatttgtTATGGCGTTTAAAATAA
TCATCTTGCAATAAACTTATAACAATCCCACTCTTTGTGTTCATTTTTGA
TTCTGTTTTCTCAACTGAGGCCATGAAAGTTCCGTGCAATTTTCACTTGC
AATGTTTTCGATTTTGAGTTGAGTTCGTCCTGGTCAAATATCTCCAGATA
CTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024808XLOC_024808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040723-exon-sc0002537-1491911889:18766..19219TCONS_00040723-exon-sc0002537-1491911889:18766..19219Clytia hemisphaericaexon
TCONS_00040723-exon-sc0002537-1510915933:18766..19219TCONS_00040723-exon-sc0002537-1510915933:18766..19219Clytia hemisphaericaexon
TCONS_00040723-exon-sc0002537-1575043694:18766..19219TCONS_00040723-exon-sc0002537-1575043694:18766..19219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002537supercontigsc0002537:18766..19219 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.290249	0	0	0	0	0	1.06958	0.665298	1.49378	1.16235	0.433242	1.53462	0.642365	0.405163	0.154682	0	1.02724	1.52692	1.24316	0.687085	0.291173	0.25115	0	0.968018	0.39197	0.85296	0.25764	0.585444
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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