TCONS_00040717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040717
Unique NameTCONS_00040717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length902

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040717 ID=TCONS_00040717|Name=TCONS_00040717|organism=Clytia hemisphaerica|type=transcript|length=902bp
ACCGAGTTAGATTCGTTGAAGATTTTATATGCACTCTTTTGATAGTTATC
CCTAATGCTGGAATACTTGAACTGTTGAATTTTGTCATCGATCATATGTC
AAAGCCGTCCATCGATCAGAATGATTTGGATTCTTGGTCAGAGAACATGA
AAAAATTAGCTGCCTATCCGAATGTACATTGTAAAATATCTGGCCTTTCG
ATACATGCAGATTCAAGCAAGCCACTCGCACCACAAATCACACCATATAT
TAAGCGGATCATTGAAATATTTGGTAGCGCTCGTTGTTTGTTTGGCTCTG
ATTGGCCCGTTTGTTTGTTAGGGATAACTTACTCTGGTTGGTACGAACTA
GTCAAATCTTCCATACAACATCTCTCAAATGAAGATAAAGATAATATTTG
GTTCAAAACAGCTCAAAAAGTTTATCACCcaaatgtatgagcgatttttA
AAACTCATTCTTGAAACCCGAAGAATTTATAGATTCATGGCTTTAGAACG
TTAGCATAGATAGTGTGGAAGATGAAGAATATCGCTTGATTTCATGttac
acacttttttctattttttgtggtgtttatgaaatttttttattaaaaaa
cttttatatgaaaatgaaattttaaatttagattttttcattttttttaa
attaatatACTACAGAATTTCACGATCATGGGATATTctataatttttca
atttattattttaaccattttctAAGAATTTGATCAACAAACTTCACAGA
AgtctctaaaaaactttttataatcTCTAGAAAAATTCTAACAGTGTCTC
CGCctagaaaacaaactttttaatAGAAAAGTTAGACAGACAGACGGTGA
AACACATAATTAGAaatgggtggaaaatgttttatAAAATTCTTAGCTTG
AT
Run BLAST on NCBI

transcript from alignment at sc0002537:1872..5761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040717 ID=TCONS_00040717|Name=TCONS_00040717|organism=Clytia hemisphaerica|type=transcript|length=3890bp|location=Sequence derived from alignment at sc0002537:1872..5761- (Clytia hemisphaerica)
ACCGAGTTAGATTCGTTGAAGATTTTATATGCACTCTTTTGATAGTTATC
CCTAATGCTGGAATACTTGAACTGTAAGTCCGATATGTCAATCAGAATCT
CTTTTTGAAATAAATGTTAAATAATAGTATGATTTTTCATCACGATTGAA
TTTGGATTGAATTTGGATTATGTTAAATTTGATGCAAATGTTTGCTGCGA
CCGTAGTGCAGTGGTAGAGCATCCGGCTACGGTGCCGGGTCATACCGAAG
ATTCCCAAAAAGGTACTTGATGCCTCTCCGCTCGATAATGCTCAGCAATT
AAGAGAAGGATCAAGAGTAAAAGGAGCAATCCAGGGAGGAAGAGTGGCGC
CCTCCCCTACCTTCGGGTAGGTAGCTATCGAACTTCGGGTCGCCTGCGAC
TCCGGTCGAAAACCTACTTACTTGATGTAGGTTTAAGCTCCCCTGGGATC
CAATTAATCAAATTTACTTATCGCTGGGCTTCTTAGTGTGACCCATAGGT
GACACAAATCTCTATAATGTAAATTTTATTTTAGGCNTGGGCTTCTTAGT
GTGACCCAAAGGTGACACAAATCTCTAATGTAAATTTCATTTTAGGTTGA
ATTTTGTCATCGATCATATGTCAAAGCCGTCCATCGATCAGAATGATTTG
GATTCTTGGTCAGAGAACATGAAAAAATTAGCTGCCTATCCGAATGTACA
TTGTAAAATGTAAGATCATGCCTCATAATGAAACTTGATTTATCATGTGC
GTAATGTAATGATGGGTGTAAGACGTAATCATTGGTTGTAATTTTCAGTG
AACTTTGATATTGATCATCCTTTATGGGTTAACCCTTTCAGCATCTTCCT
ATTTTTTTAGTTGGGGAGCCATCTTGGAAAGGAGGGGGGGCTCCCCCAGC
TTAAAATATCAAGATTGACTAGTCCTATGACCTTGGAATTGACCAGTGGT
AGATATTGATAATCGAAGCTGGTTCAAGTTTGTAAACTTGACCAAAATCA
TATTTTGACTGATTGACTCGTTTGATTTGACTGAAATTTGATCCTGAATA
CTGATTTGTCAAATAAAAGAGACTAGTAACAGAAAAAATTTGTTCCCATG
AGTATTTGGTACTTTGCAGACCGGTCTGTAAAATACACGCTGACCACCTG
CTGGAACTCAGGAACTACTACAGCTTTTGACTTGAAATTTTCACCAGTGA
TAGATATCTCAAACAGTGAGCAAAATTTCAATTTAGTCACGAGATCGGTT
GGTATTTTACAGACCGGTTCGTTTTTTACCTAAAATGCTCACTTTCACTA
TAACCACACGATTTTGCTGAAATTTTGGCTGTAAGCTTGTATCATCAAGT
TAATAGCATTTTCCCATTACTAGATACAGTATCCTTNATGCTCACTTTCA
CTATAACACGATTTTACCGAAATTTTGGCTGTAAGCTTGTATCATCAAGA
CCTAACACTTGTCAAAATTTCAAGTTAATAGCATTTTCCCATTACTAGAT
GCAGTATCCTCGGGCTGTTTAGGCTAAAAAGGCAATTTTGGGCCAGTCTG
TAAAATACACGATAACAACAGGTGGCAAAAAATCGACCCTCTGCCCCAAA
ATAAATGTCACGTTGAGTTACCTCACAAAATTTGAGTAAAATATCAAAGT
GATTTATTTTCGTTTTTTTTCAAAGAATGATGACGTCATTAGGTGGCAAT
GACGCCATCAATGATGCCGAAATTTTCACCGAAGATTCATATTTAGTGCA
CACTTGGAAAATTTTAAGTTATTTTGACAAATATTTCAAAAGCTATAAAA
AATCGTTTTGTGGGAGCCTCTTTGTCCCCTTCCCCCTTCCCCCTAGATGC
TCGAAGGGTTAAGCTAACATTACATTGTGTAATTTCTTTGATTGTTTCAG
ATCTGGCCTTTCGATACATGCAGATTCAAGCAAGCCACTCGCACCACAAA
TCACACCATATATTAAGGTTTGTGTCATATAAGTTTTGTACCTGAGAGCT
TTTTTTAGAGAAAAAAATTAATTCCAAAGGCGAAAATAAAAAAATGTGGT
GTTTCCAGCAACCGGCTGGGTGAAAAAAAATTTCTGACCCGGCTGCAGAC
CATGGTTTCATCTATATGGTTCATCATAAAGAAAATTAATTTGACCGTTC
AAGCTATCAAACATCGTTTAGTTAGAGATTCTCACCTGTCAATCAAGTTT
TGTTTCTTAGTAGTTGATACATTAGTATTCAGGGCTTACTTCCTACTGCT
TGTAAATAAAAATTTTCTTTAAAGTCCTATTTCAATGATCTTAAGTTATC
AAAAATAGCCCCGCCTCATGAGAGCTTTTTTCCTTCACCCGCATTCCGGA
AACATTACATTTTTTTATTTTCGCCAAACGTTGGATTTTTTTCTACTAAA
ACCATTTGTTTTGCACTTTCAGCCTCAAACTGTTCTTATTGTAATTGGAA
AATTGAGGATTTTCTACCTTTAATGGCAAAACAAAAACGTCCCCAAATTC
AAAAAATTGATGTAGCCTCGTCAAATTATCAAAAAGACTGACAACCTTAC
AGGGTTATTTTTGAACTTATTTCTTATGTTTCCTGAAAGTTTGGCAGCTG
AACAACGTTTTTTTTTTTTCAAGATACTGCAAATTGCCGTAGATGACATC
AATTTTTCGAAATTTGGGGACGTTTTTTTTTGCTCCTCCAGACTGAGGTT
TATTCTTTTTAAAATTGTTCTTATTTTTGCGTTTTTAAGCATATTTTTTT
AACAAACTTATATGTTCTGTTCTATATATACTGCGGAGTGTCCATAACTC
GAACTAGCGCGGAGAACACAAATTTGTTCAAAATTTTGAGTTGCCAATAA
GGTTGATATATAAGCATGGCGTTCTAAATCTTTATTCTAAATTTAGAACG
CCGCAAAGATTTTCCAAAAATTTGATACCCCCTCCCCCCTTGTACGCAGA
GAACAATAGAAATGATGTCATTTAAACAATAGGTGTACGCTTTTGCTAAA
CCCCCCTCTCTCCCCTTCACTACGTACGTACTATATGGATGGCCCCATAT
AAGGCATTTCAAAACTGAAAAGAAAAAAGAAAAAGCTTGTTCGAGTTAAA
AAGACTTTACTTTATATTTGAAATAGTAAAAAGAGTACTGTTATCGTTAA
AAAGCACACTTCTCTCAATGTCTGGGATAAAGGGGATACCACTGTTTTGA
AGTGGCAATCTAAAGCATTTTTTCTTTCCTCCTTTTTTATAGCGGATCAT
TGAAATATTTGGTAGCGCTCGTTGTTTGTTTGGCTCTGATTGGCCCGTTT
GTTTGTTAGGGATAACTTACTCTGGTTGGTACGAACTAGTCAAATCTTCC
ATACAACATCTCTCAAATGAAGATAAAGATAATATTTGGTTCAAAACAGC
TCAAAAAGTTTATCACCCAAATGTATGAGCGATTTTTAAAACTCATTCTT
GAAACCCGAAGAATTTATAGATTCATGGCTTTAGAACGTTAGCATAGATA
GTGTGGAAGATGAAGAATATCGCTTGATTTCATGTTACACACTTTTTTCT
ATTTTTTGTGGTGTTTATGAAATTTTTTTATTAAAAAACTTTTATATGAA
AATGAAATTTTAAATTTAGATTTTTTCATTTTTTTTAAATTAATATACTA
CAGAATTTCACGATCATGGGATATTCTATAATTTTTCAATTTATTATTTT
AACCATTTTCTAAGAATTTGATCAACAAACTTCACAGAAGTCTCTAAAAA
ACTTTTTATAATCTCTAGAAAAATTCTAACAGTGTCTCCGCCTAGAAAAC
AAACTTTTTAATAGAAAAGTTAGACAGACAGACGGTGAAACACATAATTA
GAAATGGGTGGAAAATGTTTTATAAAATTCTTAGCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024806XLOC_024806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040717-exon-sc0002537-1575043694:5689..5761TCONS_00040717-exon-sc0002537-1575043694:5689..5761Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1575043694:5053..5166TCONS_00040717-exon-sc0002537-1575043694:5053..5166Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1575043694:3795..3861TCONS_00040717-exon-sc0002537-1575043694:3795..3861Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1575043694:1872..2519TCONS_00040717-exon-sc0002537-1575043694:1872..2519Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1510915933:5689..5761TCONS_00040717-exon-sc0002537-1510915933:5689..5761Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1510915933:5053..5166TCONS_00040717-exon-sc0002537-1510915933:5053..5166Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1510915933:3795..3861TCONS_00040717-exon-sc0002537-1510915933:3795..3861Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1510915933:1872..2519TCONS_00040717-exon-sc0002537-1510915933:1872..2519Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1491911889:5689..5761TCONS_00040717-exon-sc0002537-1491911889:5689..5761Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1491911889:5053..5166TCONS_00040717-exon-sc0002537-1491911889:5053..5166Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1491911889:3795..3861TCONS_00040717-exon-sc0002537-1491911889:3795..3861Clytia hemisphaericaexon
TCONS_00040717-exon-sc0002537-1491911889:1872..2519TCONS_00040717-exon-sc0002537-1491911889:1872..2519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002537supercontigsc0002537:1872..5761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.240178	0	0	0	0	0.24655	0	0	0.890017	0	0	0	0	0.2553	0.322718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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