TCONS_00040710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040710
Unique NameTCONS_00040710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040710 ID=TCONS_00040710|Name=TCONS_00040710|organism=Clytia hemisphaerica|type=transcript|length=462bp
NNCCAATGCCAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACCA
AAGATGTTATTCCTCCATCACCAAAGAATAATGAAACCAATGCCAACGAC
GCACAATCCAAGGACGAGAACATTCTTCCAACCGAAGATATTATTCCCCC
ATCACCAAAGCTTTGCTGCTATTCCCGAAGAAGTTCCAAAAGGATGTGAC
ATCAATGCTGAGAATTTTGATAAaggaaaattgacaatttcaatTAGCAA
CTCTGGACAAAAGTTACTCAAGCAATTTCATAGAATCTATTGCGAATTTT
GCCAGACCAACATTTTCCCAAATCTCATTGAGTCACATAAAACATCCCTT
GGAGagaacaaaaactttcaaaatttaatcGACAAATgggatgttttaaa
aattacaaaggtgcgaaaagatgttgttggaTGTTTCCTTCCAGAAATTG
AAAATCATGTTG
Run BLAST on NCBI

protein sequence of TCONS_00040710-protein

>TCONS_00040710-protein ID=TCONS_00040710-protein|Name=TCONS_00040710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
PMPTTHNPRTRTFFQPKMLFLHHQRIMKPMPTTHNPRTRTFFQPKILFPH
HQSFAAIPEEVPKGCDINAENFDKGKLTISISNSGQKLLKQFHRIYCEFC
QTNIFPNLIESHKTSLGENKNFQNLIDKWDVLKITKVRKDVVGCFLPEIE
NHV
Run BLAST on NCBI

transcript from alignment at sc0002536:7255..13415-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040710 ID=TCONS_00040710|Name=TCONS_00040710|organism=Clytia hemisphaerica|type=transcript|length=6161bp|location=Sequence derived from alignment at sc0002536:7255..13415- (Clytia hemisphaerica)
NNCCAATGCCAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACCA
AAGATGTTATTCCTCCATCACCAAAGGTACTTAACTTTTTAATCTTCCTT
TAATTCTTTCCTTCGTCCGTTTGTTCCTCCATCGGTCTGTCTGTTACCAG
CTTTTCTCGGTTTTGGCTCCTTAGTTTTTTCTTATTTTTATTCAGTGTAC
TAGCAATTCCCAAAATATGACGGTAGTCTTCTCCTTTGTTTTTCTTCCGG
CCAAAAAGAAACCTTTGCGTCCCGTGAACGTGATCACGAATTTCGTTTGA
TCTGATTTACGTTAGAATAATGAAACCAGTGCCAACGACGAACAATCCAA
GGACGAGAACATTCTTCCAATCGAAGATATTATTTCCCCCTTACCAAAGG
TACTTGATTTTTGAACCTTCCTTTAATTTTAGGCCTTTGTCTGGTAAAAG
ATTCATTTCCGGTTGAATTCACTATTTTACTCCAGTGACTTTATGTGACG
GACATAACAAACTGACTTTAAAGAGAAATATGTAGTTTTCTACTTTGTTT
ATATATCGAAATCACTGTCTTACGCAGAAAAAAATAGGGAAAAAGCTGAT
CGAAGGTGATTCCTTCCTGCAAAAAAGAAAGCTTTGCGTCCCGTGAACCT
GACTTTTCGTTTTATTTGATTTACGTTAGAATAATGAAACCAATGCCAAC
GACGCACATTCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTATTCC
TCCATCACCAAAGGTACTTAACTTTTTAATCTTCCTTTAATTTTTTCCTT
CGTCCGTTTGTTACTCCGTCGGTCCGTCTGTTACTAGCAATTCCCAAAAT
ATTACGATAGTTTTGTCCTATGTTTTCCTTCCGGTCAAAAAGAAACCTTT
GCGTCCCGTGAACGTGATCACGAATTTCGTTTGATTTGATTTACGTTAGA
ATAATGAAACCAGTGCCAACGACGAACAATCCAAGGACGAGATGATTCTT
CCAATCGAAGATATTATTTCCCCCTTACCAAAGGTACTTGATTTTTGAAC
CTTCCTTTAACTTTAGGCCTTTGTCTGGTAAAAGATTCATTCCCGGTTGA
ATTCACTATTTTAGTCCAGTGACTTTATGTGACGGGCATAACAAACTGAC
TTTAAGGAAAAATATGTAGTTTTCTACTTTATTTATATAAATCGATGTCA
CTGTTTGACGCATAAAAAAATAGGGAAAAAGCTGATCGAAGGTGATTCTT
TCCTGCCAACAGGAAAGCTTTGCGTCCCGTGAACGTGATCATGAATTTCG
TTTTCTTTGATTAACGTTAGAGTAATGCAACCAATGCCAACGACGAACAA
TCCAAGGACGAGAACATTCTTCCAACCGAAGATATTATTCCCCCATCACC
AAAGGTACTTGATTTTTGAATCTTCCTTTAACTTTAGCCTTTGTCCCTTT
GTTCCTCCCTTCGTTTGTTACCAGCTTTTCTCGGTATTAGTTCATCATTT
TTTTCTTTTCTTTTTTTTCTCAACTTCAGTTGAGCTAGAATCTGAGAATG
TCTGTCTGTCTGTCTGTCTGTGTGTGTATCTGTCTGTCTGTGTGTATGTC
CCAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATTGTCGGATTTGGCTG
AAATTTGGCACACTTGTTCCTTGGGTCAATATCCGGGGGTGCTTTTTTCA
TTTTTTGAAAATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAA
GCGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGTCGGATT
TGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTGTTT
TTTTCATTTTTCAAAAATTTTTATTTTTGGGGCCTGGGGACGAGTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTTTTGATTTCATCGTGTTTAAGCCACCTTCCCAACATCCAAA
GGACTCTAAATGCGTTCAGCAAACAGCTAAACCGGCGTGCGACGGCGGGT
ACCGGCTAGTCTATTTATAATATATAAAGATAATTACTGTGTCATAAAAT
CTGCTCTCCTACACAAATTTTTCTCTCCTACAGAAATCTTGCGCCCCCCC
CTTGTCTACGCTACTGGGAAAGACCCGGTGTAGCGGATTATTTTAACTCC
CTGTAAAAGATAACTCCCCAGTCATAATAAACTAGTAAAAAACACTCCCC
TAGAGTAGAAATTTCCCAGGAAATTATAACTCCCTTAGTAAATAATGACT
CCCCAAAACCTTTATTCTAAAGAGGTAGGGAGTTAAAATAAACTAGTTGG
ATAAGACTCCCCTCAAAAGTCAAGCAAAAGAAGTCATTGTATTGCAATGC
ATTTCGAACGTTCGAATGTTTTGATTTCCTCTGATGCAATACACATGCAC
ATGGTCAGATACTAAACTGCTTTGCAAAATACAAGATGGCGACGAGAAAT
CACGTTTGTTTTGAAGAAGTAAAAACTTATTTGGAGAAAAGTAACTATCC
AGATGATTTTTCAGGTTAGTTATTTCTTATTTCATGGCTGATGTACTCGT
GTGATTGTTTACACCTTTGATTTCGGAAGAAATCAAGAGTACCTAGATTG
ATACTGTGGAAATTATGGAGATGACACATGCTGTTGTTGGTATTCCCAGC
AAAAAACAGTTGTTCAGGTAAACATATGATATGAAAGAATCACTAATTGA
TGTACTTCACAACGTACACAATAATATTTCCGTATTTAGATTCAAGAAGA
AAGAATGTTGATAGAAGAAAGCATTTTACATGGTGACAAGATAAAAGTCT
TCGTGGAGACATCCTCCATCCTGACAGAAAACCTGCCGATGCTAATAAGC
GTTGATCAGCAATACCAATTTATACAGAACTCATCAACGGTAGCTGCAGC
AGCCATCTCAACAGCAACATTATCAACATTAACACATGCCATGAAAAAAA
CAAACAAAGGAAACAGTAGCGTAGACAGGAGGGCGCAAAATCTGTGTAAA
AATCTGCTCTCCAACACAAATTTTCTCTCCTACACAAATTTTTCTCTCCT
ACACAAATTTTGCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCAGGGGGGGCCGGGGGGAGCCATGGAGCT
TTTTTGAAGGGGCGCCGAAGAGCAAGGGGCGCCAAAGGGGATTTTTTAAC
GCCCTAATCTTAAAAACCGTACTTTATGCACCTTAAATTGCGCCCCAGTA
TCAATTTTACTGAAATAGTTTTAAAATACTTGCAATTTTTTTCGCTCGTT
TCGCTCGCAATAGAGTTTAATTGGTAACTTTTTTGCAATCTAGCTAATTT
ACAAGTTTTTTTTGTGTACAATATAGTATTAATAAATGAAAATCTAACGG
CGCCCAAGGCCAATTTGCTGACAACAATATTGAAATCATAAAACATCAAT
TTTTTCGCTCGCTTCGCTCGCATTACACATTGTTTCTATAAGTTTCTTTT
CACTCTAGCAAGTGTCAAATTTATCTTTTTTTAATTAGTGATTTAGAGTA
TCTTAGCAGTTGATTTTCAAAATTTTCTAGTAGGCCCCAACCATGGTGGG
GCCTTTTCTTCCTTTTTCCATTCAACAAAGATATATCTACTCTTCTCCAC
AAAATATTTCCTTCCTCATTATGTCTAGGCAAATGAATTAGTAAAAGTTT
AAAAACTGGTGGGTGTTGGCACCACTTTGGAAAAAAAATGACTTTGGCCC
CTCCAGAAAAACTTTCCCACAACGCCACTGATAAGAGACTTGGATTTTTC
TTTTATCAGCTTTGCTGCTATTCCCGAAGAAGTTCCAAAAGGATGTGACA
TCAATGCTGAGAATTTTGATAAAGGAAAATTGACAATTTCAATTAGCAAC
TCTGGACAAAAGTTACTCAAGCAATTTCATAGAATCTATTGCGAATTTTG
CCAGACCAACATTTTCCCAAATCTCATTGAGTCACATAAAACATCCCTTG
GAGAGAACAAAAACTTTCAAAATTTAATCGACAAATGGGATGTTTTAAAA
ATTACAAAGGTGCGAAAAGATGTTGTTGGATGTTTCCTTCCAGAAATTGA
AAATCATGTTG

Coding sequence (CDS) from alignment at sc0002536:7255..13415-

>TCONS_00040710 ID=TCONS_00040710|Name=TCONS_00040710|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0002536:7255..13415- (Clytia hemisphaerica)
CTTTGCTGCTATTCCCGAAGAAGTTCCAAAAGGATGTGACATCAATGCTG
AGAATTTTGATAAAGGAAAATTGACAATTTCAATTAGCAACTCTGGACAA
AAGTTACTCAAGCAATTTCATAGAATCTATTGCGAATTTTGCCAGACCAA
CATTTTCCCAAATCTCATTGAGTCACATAAAACATCCCTTGGAGAGAACA
AAAACTTTCAAAATTTAATCGACAAATGGGATGTTTTAAAAATTACAAAG
GTGCGAAAAGATGTTGTTGGATGTTTCCTTCCAGAAATTGAAAATCATGT
TAATCCAAGGACGAGAACATTCTTCCAACCGAAGATATTATTCCCCCATC
ACCAAAGAATAATGAAACCAATGCCAACGACGCACCCAATGCCAACGACG
CACAATCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTATTCCTCCA
TCACCAAAGCTTTGCTGCTATTCCCGAAGAAGTTCCAAAAGGATGTGACA
TCAATGCTGAGAATTTTGATAAAGGAAAATTGACAATTTCAATTAGCAAC
TCTGGACAAAAGTTACTCAAGCAATTTCATAGAATCTATTGCGAATTTTG
CCAGACCAACATTTTCCCAAATCTCATTGAGTCACATAAAACATCCCTTG
GAGAGAACAAAAACTTTCAAAATTTAATCGACAAATGGGATGTTTTAAAA
ATTACAAAGGTGCGAAAAGATGTTGTTGGATGTTTCCTTCCAGAAATTGA
AAATCATGTTAATCCAAGGACGAGAACATTCTTCCAACCGAAGATATTAT
TCCCCCATCACCAAAGAATAATGAAACCAATGCCAACGACGCACCCAATG
CCAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTT
ATTCCTCCATCACCAAAGCTTTGCTGCTATTCCCGAAGAAGTTCCAAAAG
GATGTGACATCAATGCTGAGAATTTTGATAAAGGAAAATTGACAATTTCA
ATTAGCAACTCTGGACAAAAGTTACTCAAGCAATTTCATAGAATCTATTG
CGAATTTTGCCAGACCAACATTTTCCCAAATCTCATTGAGTCACATAAAA
CATCCCTTGGAGAGAACAAAAACTTTCAAAATTTAATCGACAAATGGGAT
GTTTTAAAAATTACAAAGGTGCGAAAAGATGTTGTTGGATGTTTCCTTCC
AGAAATTGAAAATCATGTTAATCCAAGGACGAGAACATTCTTCCAACCGA
AGATATTATTCCCCCATCACCAAAGAATAATGAAACCAATGCCAACGACG
CACCCAATGCCAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACC
AAAGATGTTATTCCTCCATCACCAAAGCTTTGCTGCTATTCCCGAAGAAG
TTCCAAAAGGATGTGACATCAATGCTGAGAATTTTGATAAAGGAAAATTG
ACAATTTCAATTAGCAACTCTGGACAAAAGTTACTCAAGCAATTTCATAG
AATCTATTGCGAATTTTGCCAGACCAACATTTTCCCAAATCTCATTGAGT
CACATAAAACATCCCTTGGAGAGAACAAAAACTTTCAAAATTTAATCGAC
AAATGGGATGTTTTAAAAATTACAAAGGTGCGAAAAGATGTTGTTGGATG
TTTCCTTCCAGAAATTGAAAATCATGTTAATCCAAGGACGAGAACATTCT
TCCAACCGAAGATATTATTCCCCCATCACCAAAGAATAATGAAACCAATG
CCAACGACGCACCCAATGCCAACGACGCACAATCCAAGGACGAGAACGTT
CTTCCAACCAAAGATGTTATTCCTCCATCACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024802XLOC_024802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040710-exon-sc0002536-1575043694:13340..13415TCONS_00040710-exon-sc0002536-1575043694:13340..13415Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1575043694:12709..12736TCONS_00040710-exon-sc0002536-1575043694:12709..12736Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1575043694:12012..12067TCONS_00040710-exon-sc0002536-1575043694:12012..12067Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1575043694:7255..7556TCONS_00040710-exon-sc0002536-1575043694:7255..7556Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1510915933:13340..13415TCONS_00040710-exon-sc0002536-1510915933:13340..13415Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1510915933:12709..12736TCONS_00040710-exon-sc0002536-1510915933:12709..12736Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1510915933:12012..12067TCONS_00040710-exon-sc0002536-1510915933:12012..12067Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1510915933:7255..7556TCONS_00040710-exon-sc0002536-1510915933:7255..7556Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1491911889:13340..13415TCONS_00040710-exon-sc0002536-1491911889:13340..13415Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1491911889:12709..12736TCONS_00040710-exon-sc0002536-1491911889:12709..12736Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1491911889:12012..12067TCONS_00040710-exon-sc0002536-1491911889:12012..12067Clytia hemisphaericaexon
TCONS_00040710-exon-sc0002536-1491911889:7255..7556TCONS_00040710-exon-sc0002536-1491911889:7255..7556Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040710-proteinTCONS_00040710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002536supercontigsc0002536:7255..13415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19622	0	0	0	0.26454	0	0.598008	4.89174e-07	1.06543	2.81745	4.51915	2.5275	1.1394	1.20915	0.272	1.00977	0.345367	0.756785	1.29354	2.07803	0.433107	0	0.160783	0.170296	0	0	0.576842	0.820829	0	0.103579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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