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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040709 ID=TCONS_00040709|Name=TCONS_00040709|organism=Clytia hemisphaerica|type=transcript|length=1921bp
acaacaatattgaaatcataaaacatcaattttttcgctcgcttcgctcg
cattacacattgtttctataagtttcttttcactctagcaagtgtcaaat
ttatctttttttaattagTGATTTAGAGTATCTTAGcagttgattttcaa
aattttctagtaggccccaaccatggtggggccttttcttcctttttcca
ttcaacaaagatatatctactcttctccacaaaatatttccttcctcatt
atgtctaggcaaatgaattagtaaaagtttaaaaactgGTGGGTGTTGGC
ACcactttggaaaaaaaatgactttggcccctccagaaaaactttcccac
aacgccactgataAGAGActtggatttttcttttatcaGCTTTGCTGCTA
TTCCCGAAGAAGTTCCAAAAGGATGTGACATCAATGCTGAGAATTTTGAT
AAaggaaaattgacaatttcaatTAGCAACTCTGGACAAAAGTTACTCAA
GCAATTTCATAGAATCTATTGCGAATTTTGCCAGACCAACATTTTCCCAA
ATCTCATTGAGTCACATAAAACATCCCTTGGAGagaacaaaaactttcaa
aatttaatcGACAAATgggatgttttaaaaattacaaaggtgcgaaaaga
tgttgttggaTGTTTCCTTCCAGAAATTGAAAATCATGTTGCTGGCCCAA
ATGCTAGAAGATTCATACTACGTCGGTGTGATCACACATCTTCAGCACAC
GCGTTTACCCAATCGTCAACTGCATCCACCACAAGAGCTAAAAAGCAAGT
CAACCGACTCAATACCACCTTGAAGAAAGACTTTACACCAGTCAAAAAAG
TGGTAGCCATCGAAAAATCTCCTTCTCAAGTATCAAAAGGAAAAACAGTT
ACACTCACTGGGAAATACAACAACAAAATTAAACCAGAAAATTGGAATCC
ATGAAGAATCCCAAGATGACTTGGACAAATTTTCCAAaggattttgtttt
tcaatcatcCATGTTGGTATCAACAAATGCTTATCAACCAATGCAATCAT
AGATAACTACCAGAAAGCTATCGAAGGTAAATTTATGGAATATATATTCA
ACTTATTTTACCTATAGATAATCTAGCCAAATCCTCAAGCAGATCTGTAA
ATTAGGAGGCCAAACATCAATTGGGAGTCTTTACACCATACATCTTGTTA
CAGTTATTCTTAGGCTTTCTTAACAACCAAAATCTTCTATTGTTTTAAAG
GTATGCGATGTTATCAAAAGATTGTGACACATTCTGCATCATCAGGAGTT
TCAGCTAAAGAACTTGCACCTCCGCCTGAAGTGACACTAAACAAACACAT
TGGTGAGATGGAAAGAGCAATCCTCGATACATACAGATACCATAATACAG
CCTCTCTCtataaacaaatgaaagaaTCTCCTTTCTGGAGTATAATACAC
GATGGAATGTCCAAGTTTTCAGTTGAGTTCAATCGTTCAATGGAGTTCTC
ATACGAGGAATAAATGAAACAAACGACCCATTCGAAGTTCCACATTGTCT
TTCCAAAATGAAAGGTGGAGTCAATGCCTTTGATCTTTGATGTAAgtcta
aattttgttttgataagtGCTCACTCACtcaagatatttttgaatggttt
taaagaaatctttgaaaaatctataCCGTTGTTGTATAAACTTTAAGTCA
ATGATAATGCTGTGTGTATGTTCATCAATAATCGTATTGAAaaggaaaca
aatatttttctctcAGCGGAAGAAAACATATCCAACGTTGCTGACATAAT
ATCTGTCAAGGGGTCTGCTTATGACGACATTAACAAAAAACTGGAAGCAa
caccaatagaatggcttcatttcgctTTGGAGCGAAACGTTACCGTCAAG
TGCAAACATGGTCTAAGCAAC Run BLAST on NCBI transcript from alignment at sc0002536:6025..7945- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040709 ID=TCONS_00040709|Name=TCONS_00040709|organism=Clytia hemisphaerica|type=transcript|length=1921bp|location=Sequence derived from alignment at sc0002536:6025..7945- (Clytia hemisphaerica)
ACAACAATATTGAAATCATAAAACATCAATTTTTTCGCTCGCTTCGCTCG
CATTACACATTGTTTCTATAAGTTTCTTTTCACTCTAGCAAGTGTCAAAT
TTATCTTTTTTTAATTAGTGATTTAGAGTATCTTAGCAGTTGATTTTCAA
AATTTTCTAGTAGGCCCCAACCATGGTGGGGCCTTTTCTTCCTTTTTCCA
TTCAACAAAGATATATCTACTCTTCTCCACAAAATATTTCCTTCCTCATT
ATGTCTAGGCAAATGAATTAGTAAAAGTTTAAAAACTGGTGGGTGTTGGC
ACCACTTTGGAAAAAAAATGACTTTGGCCCCTCCAGAAAAACTTTCCCAC
AACGCCACTGATAAGAGACTTGGATTTTTCTTTTATCAGCTTTGCTGCTA
TTCCCGAAGAAGTTCCAAAAGGATGTGACATCAATGCTGAGAATTTTGAT
AAAGGAAAATTGACAATTTCAATTAGCAACTCTGGACAAAAGTTACTCAA
GCAATTTCATAGAATCTATTGCGAATTTTGCCAGACCAACATTTTCCCAA
ATCTCATTGAGTCACATAAAACATCCCTTGGAGAGAACAAAAACTTTCAA
AATTTAATCGACAAATGGGATGTTTTAAAAATTACAAAGGTGCGAAAAGA
TGTTGTTGGATGTTTCCTTCCAGAAATTGAAAATCATGTTGCTGGCCCAA
ATGCTAGAAGATTCATACTACGTCGGTGTGATCACACATCTTCAGCACAC
GCGTTTACCCAATCGTCAACTGCATCCACCACAAGAGCTAAAAAGCAAGT
CAACCGACTCAATACCACCTTGAAGAAAGACTTTACACCAGTCAAAAAAG
TGGTAGCCATCGAAAAATCTCCTTCTCAAGTATCAAAAGGAAAAACAGTT
ACACTCACTGGGAAATACAACAACAAAATTAAACCAGAAAATTGGAATCC
ATGAAGAATCCCAAGATGACTTGGACAAATTTTCCAAAGGATTTTGTTTT
TCAATCATCCATGTTGGTATCAACAAATGCTTATCAACCAATGCAATCAT
AGATAACTACCAGAAAGCTATCGAAGGTAAATTTATGGAATATATATTCA
ACTTATTTTACCTATAGATAATCTAGCCAAATCCTCAAGCAGATCTGTAA
ATTAGGAGGCCAAACATCAATTGGGAGTCTTTACACCATACATCTTGTTA
CAGTTATTCTTAGGCTTTCTTAACAACCAAAATCTTCTATTGTTTTAAAG
GTATGCGATGTTATCAAAAGATTGTGACACATTCTGCATCATCAGGAGTT
TCAGCTAAAGAACTTGCACCTCCGCCTGAAGTGACACTAAACAAACACAT
TGGTGAGATGGAAAGAGCAATCCTCGATACATACAGATACCATAATACAG
CCTCTCTCTATAAACAAATGAAAGAATCTCCTTTCTGGAGTATAATACAC
GATGGAATGTCCAAGTTTTCAGTTGAGTTCAATCGTTCAATGGAGTTCTC
ATACGAGGAATAAATGAAACAAACGACCCATTCGAAGTTCCACATTGTCT
TTCCAAAATGAAAGGTGGAGTCAATGCCTTTGATCTTTGATGTAAGTCTA
AATTTTGTTTTGATAAGTGCTCACTCACTCAAGATATTTTTGAATGGTTT
TAAAGAAATCTTTGAAAAATCTATACCGTTGTTGTATAAACTTTAAGTCA
ATGATAATGCTGTGTGTATGTTCATCAATAATCGTATTGAAAAGGAAACA
AATATTTTTCTCTCAGCGGAAGAAAACATATCCAACGTTGCTGACATAAT
ATCTGTCAAGGGGTCTGCTTATGACGACATTAACAAAAAACTGGAAGCAA
CACCAATAGAATGGCTTCATTTCGCTTTGGAGCGAAACGTTACCGTCAAG
TGCAAACATGGTCTAAGCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040709-exon-sc0002536-1575043694:6025..7945 | TCONS_00040709-exon-sc0002536-1575043694:6025..7945 | Clytia hemisphaerica | exon |
| TCONS_00040709-exon-sc0002536-1510915933:6025..7945 | TCONS_00040709-exon-sc0002536-1510915933:6025..7945 | Clytia hemisphaerica | exon |
| TCONS_00040709-exon-sc0002536-1491911889:6025..7945 | TCONS_00040709-exon-sc0002536-1491911889:6025..7945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002536 | supercontig | sc0002536:6025..7945 - |
Blast
The following BLAST results are available for this feature:
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