TCONS_00040706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040706
Unique NameTCONS_00040706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040706 ID=TCONS_00040706|Name=TCONS_00040706|organism=Clytia hemisphaerica|type=transcript|length=452bp
taaaaagaaGATGAAGGAAAACATTTGCATGGAGAACAAGCATGAATTCA
CGTCATCAAGCCAATATTTGTCATCTCATAGATCACCTAATACAAGTCCA
TTCAGAAGTGAAAGGTTTCTGCCGTTGTTTTCAATGTCGCCATCTCCATT
GTTATCCAGAGACAGTAGTGTTGTGGCGCCAATTAAGATTGGGATGCTTA
ATGGAACTCCAACGAAAAACAGCTTATCTTTATCAATTGGACATTTCCCA
TCTCGCAAATCACTCTTTGCTGATATtgACGAACAACAGGACAATTTTGG
TAGAGAATTtgCTCCTCCAAATTCAAACCTTGTTGTCCAGGATGCAGTTG
GCTCAGAATAtgcTCCTCCAATTTCAAACCTTGCTGTCCAGGATGCAGTT
GGCTCGGAATATGCTCCTCCAAATTCAAACCTTGTTGTCCAGGATGCAGT
TG
Run BLAST on NCBI

transcript from alignment at sc0002534:13904..18660+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040706 ID=TCONS_00040706|Name=TCONS_00040706|organism=Clytia hemisphaerica|type=transcript|length=4757bp|location=Sequence derived from alignment at sc0002534:13904..18660+ (Clytia hemisphaerica)
taaaaagaaGATGAAGGTAGTTGTTTctacaattttaaaattcaattcaT
TAGCGGTTGATGATTTTAAGATCATTTTTATATCGCTTTATGCATAAGTA
TCGGTGAACGTGAAGATCGTTGAAAATATGGTCGTCAAAAATATGAAAGC
TGAATTGAAATGATACACTGGGAGGCGtttaaaatatgttttgatGTGAC
AACTTTTTTATTATAGGAGGCAGTTTGTATAACCTCAATTTTTTAGTATC
GGCTCTCAATACCGTTTAATATTATAGTTGTCTCACTTGCTAGACTATTG
GAAtgatggaaaaaaaaattttcaacggAGAGAAATATCAGTTTCAACAA
AGGCAAGTTTACTCACACGTTTTCTGCTATAACTTTCTTTCAAGGAAAAC
ATTTGCATGGAGAACAAGCATGAATTCACGTCATCAAGCCAATATTTGTC
ATCTCATAGGTATATATTTTCATCAAATGTAATTCTTTACTTGCTGTAAA
ATTGAACTTTAAGATTATTATTCAAATGGAATATTAGTTACTAAGACTGG
TGATAATTTAATTCATTTTCCCCAAAAAATACACATTAATGTCAATTATG
GTTCTTCGTCCATTTCCCGCCCAAGTAAATTTAAGTAGATTTAGCAATGA
GACACGTTTGATTCCTCCTGTTTGAAAATTGTGATTTTCTAGACTCGGAC
TTTGTATATTTTGTTTAGATCACCTAATACAAGTCCATTCAGAAGTGAAA
GGTACATTCGAGCTTTTTTAAAAGTGTATACAAAAATTATTTGTCAACAA
TTTTACAAAATTTAACTGGATAAAATTTCGCTGGGATTTAATTGGCTATT
TCACGAAATTTTAAGATTTTTCCTTGCAATAATTGTAGTATTTACTTATT
TACAGGTTTCTGCCGTTGTTTTCAATGTCGCCATCTCCATTGTTATCCAG
AGACAGGTAATAACTCTTTGTAAAGCTAACGAAAACTCACAATGCTTTGG
TTTTATTGGTGTTATTAAGAAATTGAAATGCATTGATTTTTTCTTTCCAG
TAGTGTTGTGGCGCCAATTAAGATTGGGATGCTTAATGGAACTCCAACGA
AAAACAGGTAAACTTTTGAATTCCTTAAATATTTCACTACAAGATATATA
ACTACCTTAAAATATAAATACCATTTTTAATAACGTAGAATTTAATGTGA
AATTGTGTTGATAATAATTTAAAACAGAAAACACAATTTTTTGTGACATT
TTTACGACGTTTGTCTTAAGGTTTCCCTTTACTTTGACGCTTTATATGAA
TTATATTAAAAAATCATTTAAAGATTTGGCACTTCATTTTGAAAGAATTA
TAAGTACAAAAAGAGTAAAAGTGTATTATTTTCATTTTTTAGCTTATCTT
TATCAATTGGACATTTCCCATCTCGCAAATCACTCTTTGCTGATATGTGA
GGACGCTTATTTTCACTTCAAGCATTTCATTTGACTTGGTGAACTAAACC
AATTGAATTATTTTGATTTTAATAGTAATTTGTCTTTTGATTCTTAAATA
TATCTCACTCGATATTTCAATGACGATCAAAGCCGAAGACTAAATTTGGA
ATTTTAAtaatttgttgtttattttttagtgACGAACAACAGGACAATTT
TGGTAGAGAATTGTAAGTCATTCTTTTGGTTCATAATTTTCACACGCAAA
ATATCCATTTCTGGAAATTCTCATATTGATATATACAGCCCCTATTTCAT
ATTAGCAAACGTATCAGTGACTGCTTTAAAGGACACCCTTTGTATTTGTC
TATACTGGTAAACTAATTGCTGTAGTATGGTCTGTTATCATTGTCTGTAC
AGCGTTTCAGATTtctcaaacaaacaaaaagatgAAGTGCTTGCGCCTCA
CGTGTACACGCTcctattttttatcaaaactctTTCTCAGAGACATTTCA
CAGGAATTTTTCGCAATTGCAGACAATGAGTACACAATTTACTAACgaac
gataaacgtgagatataCTCAGGTACAGGAGTaccttttataagcataca
ggaAAATCGggctaaaacaaaaacaatatttcGTTTTTCAGCCTCAAATT
ATGCTCAGGCATATTCTTATAGAAAGAAATTctcaaatttctcaatttta
attcattttcatttccaatTGTTCATTCACCATCAATGTCTACAGGAAAT
AAATCACAAAAAGTCACCGTGACTTTTTGGGTGAATTCGCCATaattcac
ggtgaaaagctGCACTCGTGAAATATGATCACAGCTTTTTAACGTGAATA
GTGGCGAATGCACCcaaaatgattttttcctgtggttCACCCAACCATTG
AGTAAACTAACTCATCAACTGCAAAaagcattcttataaaaagagtgtAA
CCACACCATACTCTAGAAAACAAAACTATTCCTGGAAATATATTATTTNT
TTTTAtctcgaaaaattttaaacaagtaaacagtgaaaaaagtgaaaatg
atgCGTAGCTATAGAGTTACGGATTTTAGGGATATTCTGCAGACTGCCTT
AATTGTGATGAGAGTTTTTATACCACATCATACTACGAACCGGAAACTAA
TTATTCATTCGTGGAAATAAGTTATTATTTTGAACGAAAtgtcattttct
tttaatttttcagtgcTCCTCCAATTTCAAACCTTGCTGTCCAGGATGCA
GTTGGCTCGGAATAGTGAGTTATTTACTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAGTGAGTTATTTACTTCGTCTCGTATTTTGAACGAAA
TGTGACTTTTCCTATTTCAAATTGTCAAGGTCGaatgaattattattttg
aacgaaatgtcgttttcttttaaattttcagtgCTCCTCCAATTTCAAAC
CTTGCTGTCCAGGATGCAGTTGGCTCGGAAAAGTGAGTTATTTACTTCGT
CTCGTATTTTGAACGAAATGTGACTTTTCCTATTTCAAATTGTCAAGGTC
Gaatgaattattattttgaacgaaatgtcgttttcttttaaattttcagt
gCTCCTCCTCAAACCTTGCTGTCCAGGATGCAGTTGGCTCGGAATAGTGA
GTTATTTACTTCGTCTCGTATTTTGAACGAAATATGACTTTTCCTATTTC
AAATTGTCAAGGTCGaatgaattattattttgaacgaaatgtcgttttct
tttaaattttcagtgCTCCTCCAAATTCAAACCTTGTTGTCCAGGATGCA
GTTGGCTCAGAATAGTGAGACATTTACTTTGTCCCATATTTGAACGAAAT
GTACTAGTAGAATCTTTATACCACATCATACTACGAACCGGAAACTAATT
ATTCATTCGTGGAAATGAGTTATTATTATGAACGAAAtgtcattttcttt
taattttccagTGCTCCTCCAAATTCAAACCTTGTTGTCCAGGATGCAGT
TGGCTCAAAATAGTGAGATATTTCCTTTTTCCCATATTTTGAACGAAATG
TACTAGTAGAAGTAGAGTTTTTATACCACATTATACTACGAACCAGAAAC
TAATTATTCATTCGTGGAAATGAGTTATTATTATGAACGAAAtgtcattt
tcttttaatttttcagtgcTCCTCCAATTTCAAACCTTGCTGTCCAGGAT
GCAGTTGGCTCGGAATAGTGAGATANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTCTCGTATTTTGAACGAAATGTGACTTTTCCTA
TTTCAAATTGTCAAGGTCGaatgaattattattttgaacgaaatgtcgtt
ttcttttaaattttcagtgCTCCTCCAATTTCAAACCTTGCTGTCCAGGA
TGCAGTTGGCTCAGAATAGTGAGATATTTACTTTGTCCCATATTTTGAAC
GAAATGTACTAGTAGAATCTTTATACCACATCATACTACGAACCGGAAAC
TAATTATTCATTCGTGGAAATGAGTTATTATTATGAACGAAAtgtcattt
tcttttaattttccagTGCTCCTCCAAATTCAAACCTTGTTGTCCAGGAT
GCAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024800XLOC_024800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040706-exon-sc0002534-1491911889:13904..13919TCONS_00040706-exon-sc0002534-1491911889:13904..13919Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:13904..13919TCONS_00040706-exon-sc0002534-1510915933:13904..13919Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:13904..13919TCONS_00040706-exon-sc0002534-1575043694:13904..13919Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:14298..14362TCONS_00040706-exon-sc0002534-1491911889:14298..14362Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:14298..14362TCONS_00040706-exon-sc0002534-1510915933:14298..14362Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:14298..14362TCONS_00040706-exon-sc0002534-1575043694:14298..14362Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:14622..14654TCONS_00040706-exon-sc0002534-1491911889:14622..14654Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:14622..14654TCONS_00040706-exon-sc0002534-1510915933:14622..14654Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:14622..14654TCONS_00040706-exon-sc0002534-1575043694:14622..14654Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:14809..14859TCONS_00040706-exon-sc0002534-1491911889:14809..14859Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:14809..14859TCONS_00040706-exon-sc0002534-1510915933:14809..14859Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:14809..14859TCONS_00040706-exon-sc0002534-1575043694:14809..14859Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:14954..15010TCONS_00040706-exon-sc0002534-1491911889:14954..15010Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:14954..15010TCONS_00040706-exon-sc0002534-1510915933:14954..15010Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:14954..15010TCONS_00040706-exon-sc0002534-1575043694:14954..15010Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:15296..15349TCONS_00040706-exon-sc0002534-1491911889:15296..15349Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:15296..15349TCONS_00040706-exon-sc0002534-1510915933:15296..15349Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:15296..15349TCONS_00040706-exon-sc0002534-1575043694:15296..15349Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:15533..15565TCONS_00040706-exon-sc0002534-1491911889:15533..15565Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:15533..15565TCONS_00040706-exon-sc0002534-1510915933:15533..15565Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:15533..15565TCONS_00040706-exon-sc0002534-1575043694:15533..15565Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:17117..17167TCONS_00040706-exon-sc0002534-1491911889:17117..17167Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:17117..17167TCONS_00040706-exon-sc0002534-1510915933:17117..17167Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:17117..17167TCONS_00040706-exon-sc0002534-1575043694:17117..17167Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:17520..17570TCONS_00040706-exon-sc0002534-1491911889:17520..17570Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:17520..17570TCONS_00040706-exon-sc0002534-1510915933:17520..17570Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:17520..17570TCONS_00040706-exon-sc0002534-1575043694:17520..17570Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1491911889:18620..18660TCONS_00040706-exon-sc0002534-1491911889:18620..18660Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1510915933:18620..18660TCONS_00040706-exon-sc0002534-1510915933:18620..18660Clytia hemisphaericaexon
TCONS_00040706-exon-sc0002534-1575043694:18620..18660TCONS_00040706-exon-sc0002534-1575043694:18620..18660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002534supercontigsc0002534:13904..18660 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.233375	2.53401	1.66941	0.738183	1.65093	0.295833	0	0.873894	1.71426	0	0	0	0	0	0	0	0	0	0	1.14952	2.41055	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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