TCONS_00040702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040702
Unique NameTCONS_00040702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040702 ID=TCONS_00040702|Name=TCONS_00040702|organism=Clytia hemisphaerica|type=transcript|length=527bp
CATCTATCTTGATTTCAGTAAAGCATTTGACCGTGTTGATCACTCAATAC
TGCTACAGAAACTTGAAAGAAATGGCATTTGTGGAAAACTTCTATCCTGG
ATAAAGTTATTTCTTACAGGGAGAACACAGAGATTCTCTGTCAACACAAN
CACATTTGTCGCAAACTCCCCACAACATACACCTGTATCTTCACCTACCA
AAAGTATTACTGACCTCTCATCATACACCTCAATATCCTCCACTCGACCT
AGATCAAGATCTCTTCCTCCAACGCCAAGGAACCGATCACTACCACTAAC
ACCTAGTGTTATTATAGACAACAACAATGTAAATACAGACAAAACCCTTG
ATAGTGTTTATCTAGGAAGAACTGACTTCTTGaagaaaagatttcaaaga
cAACTTGAAAACAATACTAAGCTTACATCAGACTANACAAATGGTCAGAG
ATCAATAATATGCAACTGAATGGACTCAAATTCGAACATATGcaatatgg
aaaaaatgaagagcTGAAACCCtattc
Run BLAST on NCBI

protein sequence of TCONS_00040702-protein

>TCONS_00040702-protein ID=TCONS_00040702-protein|Name=TCONS_00040702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
IYLDFSKAFDRVDHSILLQKLERNGICGKLLSWIKLFLTGRTQRFSVNTX
TFVANSPQHTPVSSPTKSITDLSSYTSISSTRPRSRSLPPTPRNRSLPLT
PSVIIDNNNVNTDKTLDSVYLGRTDFLKKRFQRQLENNTKLTSDXTNGQR
SIICN
Run BLAST on NCBI

transcript from alignment at sc0002532:4146..4672

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040702 ID=TCONS_00040702|Name=TCONS_00040702|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0002532:4146..4672 (Clytia hemisphaerica)
gaataGGGTTTCAgctcttcattttttccatattgCATATGTTCGAATTT
GAGTCCATTCAGTTGCATATTATTGATCTCTGACCATTTGTNTAGTCTGA
TGTAAGCTTAGTATTGTTTTCAAGTTgtctttgaaatcttttcttCAAGA
AGTCAGTTCTTCCTAGATAAACACTATCAAGGGTTTTGTCTGTATTTACA
TTGTTGTTGTCTATAATAACACTAGGTGTTAGTGGTAGTGATCGGTTCCT
TGGCGTTGGAGGAAGAGATCTTGATCTAGGTCGAGTGGAGGATATTGAGG
TGTATGATGAGAGGTCAGTAATACTTTTGGTAGGTGAAGATACAGGTGTA
TGTTGTGGGGAGTTTGCGACAAATGTGNTTGTGTTGACAGAGAATCTCTG
TGTTCTCCCTGTAAGAAATAACTTTATCCAGGATAGAAGTTTTCCACAAA
TGCCATTTCTTTCAAGTTTCTGTAGCAGTATTGAGTGATCAACACGGTCA
AATGCTTTACTGAAATCAAGATAGATG

Coding sequence (CDS) from alignment at sc0002532:4146..4672

>TCONS_00040702 ID=TCONS_00040702|Name=TCONS_00040702|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0002532:4146..4672 (Clytia hemisphaerica)
TCAGTTGCATATTATTGATCTCTGACCATTTGTNTAGTCTGATGTAAGCT
TAGTATTGTTTTCAAGTTgtctttgaaatcttttcttCAAGAAGTCAGTT
CTTCCTAGATAAACACTATCAAGGGTTTTGTCTGTATTTACATTGTTGTT
GTCTATAATAACACTAGGTGTTAGTGGTAGTGATCGGTTCCTTGGCGTTG
GAGGAAGAGATCTTGATCTAGGTCGAGTGGAGGATATTGAGGTGTATGAT
GAGAGGTCAGTAATACTTTTGGTAGGTGAAGATACAGGTGTATGTTGTGG
GGAGTTTGCGACAAATGTGNTTGTGTTGACAGAGAATCTCTGTGTTCTCC
CTGTAAGAAATAACTTTATCCAGGATAGAAGTTTTCCACAAATGCCATTT
CTTTCAAGTTTCTGTAGCAGTATTGAGTGATCAACACGGTCAAATGCTTT
ACTGAAATCAAGATAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024796XLOC_024796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040702-proteinTCONS_00040702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040702-exon-sc0002532-1491911889:4146..4672TCONS_00040702-exon-sc0002532-1491911889:4146..4672Clytia hemisphaericaexon
TCONS_00040702-exon-sc0002532-1510915933:4146..4672TCONS_00040702-exon-sc0002532-1510915933:4146..4672Clytia hemisphaericaexon
TCONS_00040702-exon-sc0002532-1575043694:4146..4672TCONS_00040702-exon-sc0002532-1575043694:4146..4672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002532supercontigsc0002532:4146..4672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35794	0.713435	1.36092	1.35037	0.825239	1.10498	0.47025	1.19229	0.147944	0.644574	0.23805	0.98693	1.60613	1.19505	0.657711	0.651673	1.7382	1.3257	3.89919	4.24336	1.47498	2.28009	0.222948	0.88172	0.917047	1.49795	3.08105	1.45653	0.259016	0.830393
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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