TCONS_00040688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040688
Unique NameTCONS_00040688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040688 ID=TCONS_00040688|Name=TCONS_00040688|organism=Clytia hemisphaerica|type=transcript|length=610bp
CTCCAGTGTGCATTCTTTTATGTTTCATTGAatcactttttgttttgaag
tatTTACCACATTCCTGACACCTTGAAAGTGGTTCCCCAGTGTGTTCTCT
GAGATGATTCTTTAAAAGATATTTACTTCGAAATGATTTACCACATTCCT
CACATTTAAAAGATTCGATATCACTGTGAATCTTAAGATGTGCATTTAAc
ctatttttttgaataaaacatttaccacattcttgacacaTAAAAGGTTT
TTCGCCAGTGTGAATTCTAAGATGATCTTTCAAATCACAGTTGAACTTGA
AGACTTTGCCACACTTTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTG
GCAAGATCATTTTTTCTTTCCCTGGTTTCTGCATTTCCTGCTTGTAAATT
AGTGGCGGCATCTGTTGTCAAGTTTGTTGTTTGAATTATTTCATCGAGTT
CaattttaatatcaaaagaGTCTGATTGATGCTGAGATTCGGATACCTCT
TCGACAGGGGCCAAAGAATTATTTTCctcttcaatctttattttcAAGGG
TATATCGTCTGTGTTTGAGTCAATAAATTTATGATTTTCCACTCCAAAGA
AACCAAAATT
Run BLAST on NCBI

transcript from alignment at sc0002523:12097..12706-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040688 ID=TCONS_00040688|Name=TCONS_00040688|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0002523:12097..12706- (Clytia hemisphaerica)
CTCCAGTGTGCATTCTTTTATGTTTCATTGAATCACTTTTTGTTTTGAAG
TATTTACCACATTCCTGACACCTTGAAAGTGGTTCCCCAGTGTGTTCTCT
GAGATGATTCTTTAAAAGATATTTACTTCGAAATGATTTACCACATTCCT
CACATTTAAAAGATTCGATATCACTGTGAATCTTAAGATGTGCATTTAAC
CTATTTTTTTGAATAAAACATTTACCACATTCTTGACACATAAAAGGTTT
TTCGCCAGTGTGAATTCTAAGATGATCTTTCAAATCACAGTTGAACTTGA
AGACTTTGCCACACTTTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTG
GCAAGATCATTTTTTCTTTCCCTGGTTTCTGCATTTCCTGCTTGTAAATT
AGTGGCGGCATCTGTTGTCAAGTTTGTTGTTTGAATTATTTCATCGAGTT
CAATTTTAATATCAAAAGAGTCTGATTGATGCTGAGATTCGGATACCTCT
TCGACAGGGGCCAAAGAATTATTTTCCTCTTCAATCTTTATTTTCAAGGG
TATATCGTCTGTGTTTGAGTCAATAAATTTATGATTTTCCACTCCAAAGA
AACCAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024783XLOC_024783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040688-exon-sc0002523-1575043694:12097..12706TCONS_00040688-exon-sc0002523-1575043694:12097..12706Clytia hemisphaericaexon
TCONS_00040688-exon-sc0002523-1510915933:12097..12706TCONS_00040688-exon-sc0002523-1510915933:12097..12706Clytia hemisphaericaexon
TCONS_00040688-exon-sc0002523-1491911889:12097..12706TCONS_00040688-exon-sc0002523-1491911889:12097..12706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002523supercontigsc0002523:12097..12706 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36659	1.11806	1.55628	1.8025	0	0.0942812	0	0	0	0	0.0896352	0	0	0	0	0	0	0.136149	0	0	0.351067	0.269057	0.218975	0.662748	0	0.143671	0	0	0.101197	0
Blast
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BLAST of TCONS_00040688 vs. Swiss-Prot (Human)
Match: ZN718 (Zinc finger protein 718 OS=Homo sapiens GN=ZNF718 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.062e-26
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = -1 
Query:    2 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 283
            L  H RIHTGEKP++C++CGK F Q + LN H +IHS  + +KCEECGK+F+    L  H R H GE    C+ECG  F T SD  KHKR+HTG
Sbjct:  242 LTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTG 335

HSP 2 Score: 94.3597 bits (233), Expect = 2.585e-22
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = -1 
Query:    5 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHT 283
            L  H RIHTGEKP+ C+ECGK F   + LN H +IHS    +KCE+CGK+F+    L N  + HTGE    C++CGK FK  S   KHK++HT
Sbjct:  354 LTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTGEKPYICKQCGKAFKQSSHLNKHKKIHT 446

HSP 3 Score: 93.5893 bits (231), Expect = 4.576e-22
Identity = 46/95 (48.42%), Postives = 56/95 (58.95%), Query Frame = -1 
Query:    2 DLKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 286
             L +H RIH GEKPF C+ECG  F   +    H +IH+  + +KCEECGKSF     L  H R HTGE    C+ECGK F   S    HKR+H+G
Sbjct:  297 SLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSG 391

HSP 4 Score: 89.3521 bits (220), Expect = 1.541e-20
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = -1 
Query:    2 DLKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 286
            D   H RIHTGEKP+ C+ECGK F +   L  H +IH+  + + CEECGK+F     L  H R H+G+   +C++CGK FK  ++    K++HTG
Sbjct:  325 DFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTG 419

HSP 5 Score: 86.2705 bits (212), Expect = 1.929e-19
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = -1 
Query:    2 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 283
            L  H RIHTGE P+ C+ECGK F   + L  H +IH+  + +KCEECGK F     L  H R HTGE    C++CGK F   S    HKR+H+ 
Sbjct:  186 LTQHKRIHTGENPYTCEECGKAFNWSSILTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSA 279

HSP 6 Score: 85.1149 bits (209), Expect = 5.073e-19
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = -1 
Query:    2 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 283
            L  H RIH+ +K + C+ECGK F   + LN H +IH+  + F CEECG  F +      H R HTGE   +C+ECGK F   +    HKR+HTG
Sbjct:  270 LNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTG 363

HSP 7 Score: 84.3445 bits (207), Expect = 8.824e-19
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = -1 
Query:    2 KDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 280
            KD +R +TG+K F C+ECGK F   +RL  H +IH+    + CEECGK+F    +L  H R H  E   +C+ECGK F   S   KHKR+HTG
Sbjct:  160 KDKIR-YTGDKTFKCKECGKSFHVLSRLTQHKRIHTGENPYTCEECGKAFNWSSILTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTG 251

HSP 8 Score: 81.2629 bits (199), Expect = 9.724e-18
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = -1 
Query:    2 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 283
            L  H RIH  EK + C+ECGK F + + L  H +IH+  + + CE+CGK+F     L  H R H+ +   +C+ECGK FK  S   +HKR+H G
Sbjct:  214 LTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAG 307

HSP 9 Score: 78.1814 bits (191), Expect = 1.108e-16
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = -1 
Query:    2 LKDHLRIHTGEKPFMCQECGKCFIQKNRLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 283
            L  H RIH+G+ P+ C++CGK F     L+   KIH+  + + C++CGK+F+    L  H + HT +   +C+ECGK FK  S+  +HKR HTG
Sbjct:  382 LNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTGEKPYICKQCGKAFKQSSHLNKHKKIHTVDKPYKCKECGKAFKQYSNLPQHKRTHTG 475
The following BLAST results are available for this feature:
BLAST of TCONS_00040688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN7182.062e-2654.26Zinc finger protein 718 OS=Homo sapiens GN=ZNF718 ... [more]
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