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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040687 ID=TCONS_00040687|Name=TCONS_00040687|organism=Clytia hemisphaerica|type=transcript|length=809bpRun BLAST on NCBI transcript from alignment at sc0002523:5332..12708- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040687 ID=TCONS_00040687|Name=TCONS_00040687|organism=Clytia hemisphaerica|type=transcript|length=7377bp|location=Sequence derived from alignment at sc0002523:5332..12708- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040687 vs. Swiss-Prot (Human)
Match: ZN160 (Zinc finger protein 160 OS=Homo sapiens GN=ZNF160 PE=2 SV=3) HSP 1 Score: 144.436 bits (363), Expect = 1.943e-38 Identity = 72/147 (48.98%), Postives = 89/147 (60.54%), Query Frame = -3
Query: 1 KVFEERDQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 441
KV ++ +KC +CGKVF N L +H HTGEKP+ C ECGK F+ + SL H IH+ + +KC ECGK F L NH R HTGE RC ECGK+FR + L H+ HTGE +C ECGK F+ S+ H RMHTGE
Sbjct: 668 KVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGEKPYRCTECGKAFRVRSSLTTHMAIHTGEKRYKCNECGKVFRQSSNLASHHRMHTGE 814 HSP 2 Score: 130.183 bits (326), Expect = 2.013e-33 Identity = 67/140 (47.86%), Postives = 82/140 (58.57%), Query Frame = -3
Query: 1 QSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 420
+ +KC ECGK F N +L H H+GEKP+ C ECGK FT + +L H IH+ + +KC ECGK FR L H R HTGE +C ECGK+FR L H HTGE +C ECGK F S + H R+HTGE
Sbjct: 255 KPYKCNECGKAFTQNSNLTSHRRIHSGEKPYKCSECGKTFTVRSNLTIHQVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGE 394 HSP 3 Score: 129.798 bits (325), Expect = 2.438e-33 Identity = 72/178 (40.45%), Postives = 95/178 (53.37%), Query Frame = -3
Query: 1 SRKCRNQQGKEKYSCPK--KVFEER------------DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 492
+R R G++ Y C + F +R ++ +KC ECGKVF+ N L H HTGEKP+ C ECGK F+ +L H IH+ + +KC +CGK F L NH R HTGE RC ECGK+F + L H HTG+ +C ECGK F + H+R+HTGE
Sbjct: 581 ARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGEKPYRCNECGKAFSVRSSLTTHQAIHTGKKPYKCNECGKVFTQNAHLANHRRIHTGE 758 HSP 4 Score: 129.413 bits (324), Expect = 3.643e-33 Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = -3
Query: 4 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTG 423
++ +KC ECGK F+ + +L H HTGEKPF C ECGK FTQ L +H +IH+ + +KC ECGK+F + L H HTGE +C ECGK FR L H R HTGE +C ECGK F S+ H+ +HTG
Sbjct: 338 EKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTG 477 HSP 5 Score: 128.642 bits (322), Expect = 6.982e-33 Identity = 68/147 (46.26%), Postives = 86/147 (58.50%), Query Frame = -3
Query: 1 KVFEERDQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 441
+V ++ +KC ECGKVF+ N L H HTGEKP+ C ECGK F +L H IH+ + FKC ECGK F L +H R HTGE +C ECGK+F + L H HTGE +C ECGK F+ S +H+R+HTGE
Sbjct: 304 QVIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFRGHSNLTTHQLIHTGEKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGE 450 HSP 6 Score: 128.642 bits (322), Expect = 7.254e-33 Identity = 67/147 (45.58%), Postives = 85/147 (57.82%), Query Frame = -3
Query: 1 KVFEERDQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 441
+V + FKC EC KVF N L +H HTGEKP+ C ECGK F+ + SL H IHS + +KC ECGKSF K L++H H+GE +C ECGK F L H R HTGE +C +CG+ F +S H+ +HTGE
Sbjct: 472 QVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGE 618 HSP 7 Score: 126.716 bits (317), Expect = 2.512e-32 Identity = 65/141 (46.10%), Postives = 82/141 (58.16%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ +KC ECGK F L H H+GEKP+ C ECGK FTQK L +H IHS + +KC ECGK F L H R HTGE +C +CG++F + L H HTGE +C ECGK F+ S H+R+HTGE
Sbjct: 506 EKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGE 646 HSP 8 Score: 126.716 bits (317), Expect = 2.585e-32 Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ +KC ECGKVF++N L H HTGEKP+ C ECGK F+ +L H IH+ + FKC EC K F L NH R HTGE +C ECGK+F + L H H+GE +C ECGK F KS H+ +H+GE
Sbjct: 422 EKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGE 562 HSP 9 Score: 126.331 bits (316), Expect = 3.680e-32 Identity = 66/141 (46.81%), Postives = 80/141 (56.74%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ FKC ECGK+F N L H HTGEKP+ C ECGK F+ + SL H IH+ + +KC ECGK FR L H R HTGE +C ECGK+F L H HTG +C EC K F S H+R+HTGE
Sbjct: 366 EKPFKCNECGKLFTQNSHLISHWRIHTGEKPYKCNECGKAFSVRSSLAIHQTIHTGEKPYKCNECGKVFRYNSYLGRHRRVHTGEKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGE 506 HSP 10 Score: 125.561 bits (314), Expect = 6.841e-32 Identity = 64/141 (45.39%), Postives = 80/141 (56.74%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ +KC ECGKVF L H HTGEKP+ C +CG+ F+ + SL H IH+ + +KC ECGK FR L H R HTGE +C ECGK+F L H HTGE +C +CGK F S H+R HTGE
Sbjct: 562 EKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGEKPYKCNQCGKVFTQNSHLANHQRTHTGE 702 HSP 11 Score: 125.176 bits (313), Expect = 9.461e-32 Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ +KC ECGK F + +L H HTG KPF C EC K FTQ L H +IH+ + +KC ECGK+F + L H H+GE +C ECGKSF K L++H H+GE +C ECGK F S +H R+HTGE
Sbjct: 450 EKPYKCNECGKAFSMHSNLATHQVIHTGTKPFKCNECSKVFTQNSQLANHRRIHTGEKPYKCNECGKAFSVRSSLTTHQAIHSGEKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGE 590 HSP 12 Score: 122.865 bits (307), Expect = 6.292e-31 Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGE 423
++ +KC ECGK F L+ H H+GEKP+ C ECGK F Q L H ++H+ + +KC +CG++F + L H HTGE +C ECGK FR L H R HTGE +C ECGK F S+ HK +HTGE
Sbjct: 534 EKPYKCIECGKSFTQKSHLRSHRGIHSGEKPYKCNECGKVFAQTSQLARHWRVHTGEKPYKCNDCGRAFSDRSSLTFHQAIHTGEKPYKCHECGKVFRHNSYLATHRRIHTGEKPYKCNECGKAFSMHSNLTTHKVIHTGE 674 The following BLAST results are available for this feature:
BLAST of TCONS_00040687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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