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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040686 ID=TCONS_00040686|Name=TCONS_00040686|organism=Clytia hemisphaerica|type=transcript|length=971bpRun BLAST on NCBI transcript from alignment at sc0002523:5332..6302- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040686 ID=TCONS_00040686|Name=TCONS_00040686|organism=Clytia hemisphaerica|type=transcript|length=971bp|location=Sequence derived from alignment at sc0002523:5332..6302- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040686 vs. Swiss-Prot (Human)
Match: ZN718 (Zinc finger protein 718 OS=Homo sapiens GN=ZNF718 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 7.727e-64 Identity = 102/201 (50.75%), Postives = 135/201 (67.16%), Query Frame = -3
Query: 1 KVFEERDQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLHS 603
K R++ +KC+ECGK F + L H HTGEKP++C++CGK F Q +LN H +IHS + +KCEECGK+F+ L H R H GE C+ECG F T SD KHKR+HTGEKP+KC+ECGKSF R +L H RIHTG+KP+ CEECGK F+W +L H R+HSG+ P++C++CGK F NL+ +H+
Sbjct: 218 KRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHT 418 HSP 2 Score: 182.185 bits (461), Expect = 1.815e-52 Identity = 91/195 (46.67%), Postives = 119/195 (61.03%), Query Frame = -3
Query: 1 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLHS 585
D++FKCKECGK F L H HTGE P+ C+ECGK F L H +IH+ + +KCEECGK F L H R HTGE C++CGK F S HKR+H+ +K +KC+ECGK+F SL +H RIH G+KPF CEECG F+ H R+H+GE+P++C+ECGK F+ L H +H+
Sbjct: 168 DKTFKCKECGKSFHVLSRLTQHKRIHTGENPYTCEECGKAFNWSSILTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHT 362 HSP 3 Score: 181.03 bits (458), Expect = 4.057e-52 Identity = 87/192 (45.31%), Postives = 122/192 (63.54%), Query Frame = -3
Query: 1 FKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLHS 576
+KC+ECGK FK++ L +H H GEKPF C+ECG FT H +IH+ + +KCEECGKSF L H R HTGE C+ECGK F S HKR+H+G+ P+KC++CGK+F +L + +IHTG+KP+ C++CGK F L H ++H+ ++P++CKECGK F + NL +H H+
Sbjct: 283 YKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTGEKPYICKQCGKAFKQSSHLNKHKKIHTVDKPYKCKECGKAFKQYSNLPQHKRTHT 474 HSP 4 Score: 173.711 bits (439), Expect = 2.114e-49 Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = -3
Query: 1 VFEERDQSFKCKECGKVF-KFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSGEQPFECKECGKCFSERGNLYRHMYLHS 600
+ + ++ + C KVF KF+ KD + +TG+K F C+ECGK F L H +IH+ + CEECGK+F +L H R H E +C+ECGK F S KHKR+HTGEKP+ C++CGK+F + +L H RIH+ QK +KCEECGK F W SL H R+H+GE+PF C+ECG F+ + +H +H+
Sbjct: 135 LLTTQKKTIQSNICVKVFHKFSNSNKDKI-RYTGDKTFKCKECGKSFHVLSRLTQHKRIHTGENPYTCEECGKAFNWSSILTKHKRIHAREKFYKCEECGKGFTRSSHLTKHKRIHTGEKPYICEKCGKAFNQSSTLNLHKRIHSAQKYYKCEECGKAFKWSSSLNEHKRIHAGEKPFSCEECGNVFTTSSDFAKHKRIHT 334 HSP 5 Score: 154.451 bits (389), Expect = 2.787e-42 Identity = 74/168 (44.05%), Postives = 106/168 (63.10%), Query Frame = -3
Query: 82 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQKPFKCEECGKCFSWKESLKGHMRVHSG 585
++ F C+ECG VF + D H HTGEKP+ C+ECGK F + +L H +IH+ + + CEECGK+F L H R H+G+ +C++CGK FK ++ K++HTGEKP+ C++CGK+F + L H +IHT KP+KC+ECGK F +L H R H+G
Sbjct: 308 EKPFSCEECGNVFTTSSDFAKHKRIHTGEKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTGEKPYICKQCGKAFKQSSHLNKHKKIHTVDKPYKCKECGKAFKQYSNLPQHKRTHTG 475 HSP 6 Score: 133.65 bits (335), Expect = 5.806e-35 Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = -3
Query: 160 DQSFKCKECGKVFKFNCDLKDHL*NHTGEKPFMCQECGKCFTQKVSLNAHLKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPFKCQECGKSFTRKGSLKDHMRIHTGQK 585
++ +KC+ECGK F + L H HTGEKP+ C+ECGK F +LN H +IHS +KCE+CGK+F+ L N + HTGE C++CGK FK S KHK++HT +KP+KC+ECGK+F + +L H R HTG K
Sbjct: 336 EKPYKCEECGKSFNRSTTLTTHKRIHTGEKPYTCEECGKAFNWSSTLNVHKRIHSGKNPYKCEDCGKAFKVFANLHNRKKIHTGEKPYICKQCGKAFKQSSHLNKHKKIHTVDKPYKCKECGKAFKQYSNLPQHKRTHTGGK 477 The following BLAST results are available for this feature:
BLAST of TCONS_00040686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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