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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040681 ID=TCONS_00040681|Name=TCONS_00040681|organism=Clytia hemisphaerica|type=transcript|length=1982bpRun BLAST on NCBI transcript from alignment at sc0002523:588..2826- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040681 ID=TCONS_00040681|Name=TCONS_00040681|organism=Clytia hemisphaerica|type=transcript|length=2239bp|location=Sequence derived from alignment at sc0002523:588..2826- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00040681 vs. Swiss-Prot (Human)
Match: ZN554 (Zinc finger protein 554 OS=Homo sapiens GN=ZNF554 PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.138e-42 Identity = 78/180 (43.33%), Postives = 110/180 (61.11%), Query Frame = -1
Query: 1062 SKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKC------FTRQSSLNVHVKIHTGEKPFKCKECGKQFSRRSNFIQHSKIHNGIESYKCKECGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1583
++ + C+ECG+AF + L RH R HTGE+P+ C +CGK F R SSL H +IH+ + +KC F + S L +H + HTGEKP++C ECGK FS RS+ QH + H G Y+CK+CG+ FSQ+++L H +TH EKP +C +CGK F+ S L H K+HS +
Sbjct: 348 GEKPYECQECGRAFTHSSTLTRHLRTHTGEKPYGCGECGKAFNRISSLTQHQRIHTGEKPYKCEDCGKSFCQSSYLILHKRTHTGEKPYECSECGKAFSDRSSLNQHERTHTGENPYECKQCGRAFSQRSSLVRHERTHTG----------EKPYRCQECGKAFSQSSSLVTHQKTHSSQ 517 HSP 2 Score: 149.443 bits (376), Expect = 1.846e-38 Identity = 72/170 (42.35%), Postives = 106/170 (62.35%), Query Frame = -1
Query: 1110 NLATKRSKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKC------FTRQSSLNVHVKIHTGEKPFKCKECGKQFSRRSNFIQHSKIHNGIESYKCKECGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCF 1601
+L T ++ + C ECGKAF L +H RIHTGE+P+KC+DCGK F + S L +H + H+ + ++C F+ +SSLN H + HTGE P++CK+CG+ FS+RS+ ++H + H G + Y+C+ECGK FSQ ++L H KTH +K + I CGK F
Sbjct: 370 HLRTHTGEKPYGCGECGKAFNRISSLTQHQRIHTGEKPYKCEDCGKSFCQSSYLILHKRTHTGEKPYECSECGKAFSDRSSLNQHERTHTGENPYECKQCGRAFSQRSSLVRHERTHTGEKPYRCQECGKAFSQSSSLVTHQKTHSSQKT----------YKIIDCGKAF 529 HSP 3 Score: 143.28 bits (360), Expect = 3.171e-36 Identity = 73/189 (38.62%), Postives = 110/189 (58.20%), Query Frame = -1
Query: 1062 RKNNLATKRSKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKC------FTRQSSLNVHVKIHTGEKPFKCKECGKQFSRRSNFIQHSKIHNGIESYKCKECGKCFSQKNTLNIHIKTHKRKKLLLQLIEREKPLQCIKCGKCFNSVSCLTAHVKSHSEE 1610
R+N+ + + F+ E G++ L H +I+T E+PF+C CGK F R+ SL+ H +IH+ + ++C FT S+L H++ HTGEKP+ C ECGK F+R S+ QH +IH G + YKC++CGK F Q + L +H +TH EKP +C +CGK F+ S L H ++H+ E
Sbjct: 283 RQNSHFIQHGGKMFVYLENGQSLNHGMALTIHNKINTAEKPFECHQCGKVFNRRHSLSEHQRIHTGEKPYECQECGRAFTHSSTLTRHLRTHTGEKPYGCGECGKAFNRISSLTQHQRIHTGEKPYKCEDCGKSFCQSSYLILHKRTHT----------GEKPYECSECGKAFSDRSSLNQHERTHTGE 461 HSP 4 Score: 117.472 bits (293), Expect = 1.341e-27 Identity = 55/132 (41.67%), Postives = 86/132 (65.15%), Query Frame = -1
Query: 1206 SKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKC------FTRQSSLNVHVKIHTGEKPFKCKECGKQFSRRSNFIQHSKIHNGIESYKCKECGKCFSQKNTL 1583
++ + C++CGK+F + L H R HTGE+P++C +CGK F+ +SSLN H + H+ ++C F+++SSL H + HTGEKP++C+ECGK FS+ S+ + H K H+ ++YK +CGK F Q L
Sbjct: 404 GEKPYKCEDCGKSFCQSSYLILHKRTHTGEKPYECSECGKAFSDRSSLNQHERTHTGENPYECKQCGRAFSQRSSLVRHERTHTGEKPYRCQECGKAFSQSSSLVTHQKTHSSQKTYKIIDCGKAFYQNRHL 535 The following BLAST results are available for this feature:
BLAST of TCONS_00040681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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