TCONS_00040679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040679
Unique NameTCONS_00040679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040679 ID=TCONS_00040679|Name=TCONS_00040679|organism=Clytia hemisphaerica|type=transcript|length=694bp
AAAGTTCACATGAGAATGCATACTGGACAAAAGCCATTCAAGtgtgaaga
gtgtggtaaatgttttcaaaggaaagaaattttaaaaattcacaTGAGAA
TACATACGGGACAAAAGCCATTAAAGtgtgaagagtgtggtaaaTGTTTT
CAAAGGAAagacattttaaaatttcatattaGAATACATACTGGAGAAAA
ACCTTTTAAGTGCCAAGAGTGTGGTAAACGATTTTCTCAACGAGGTAATG
TGACACGACATTCAAACGTACACGATGGAGTCAAATCATTTAAATGTAAG
GCATGTGATAAGTGCTTTTCCCGAAAAGATACTTTGAATTTTCACATCAA
GAGTCATAAGTGTAAAAAACATGTCCAAATTGAAGAACAAGACAATGCTT
TCTGATGTAACAAACGTAATAAATGTTTTAACAGTTTAAGTCATTTGACT
GCTCATGTTAAAATCCGCCCCGAAGAAATTGTTCCGACCGATGGTAAAAG
TGAATCCAAAGAATTGTCAACTAAAAAACATCAAGATATAAATTTATTTA
ATGTTGCTAGTTTGATTGTCGAGAACGAAGAGACGAAGTTAAAGAAAATC
GATTATTCGAAGTATTGAGTATattttatgtgcagttgatatTATGCGAA
AAATAGAGTATTTTTACAAGGtagttgtttattttattttttag
Run BLAST on NCBI

transcript from alignment at sc0002523:8325..9948+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040679 ID=TCONS_00040679|Name=TCONS_00040679|organism=Clytia hemisphaerica|type=transcript|length=1624bp|location=Sequence derived from alignment at sc0002523:8325..9948+ (Clytia hemisphaerica)
AAAGTTCACATGAGAATGCATACTggacaaaaactttttaagtgcatTGA
ATGCGGTAAATGTTTCTCCGTAAAAAGAAGCTTAAATAGACATTTGTACT
TGCACAGTGAAATCAAACCATTTAATTGTGAAAAATGTGGTAAACAATTT
TCCCAACGAGGTTACTTGATACAACATTCATACGTACACAATAAGATCAA
CTCATTTAAATGTAAGGAATGTGGTAGATGCTTTGCACNGTGGTAAACAA
TTTTCCCAACGAGGTTACTTGATACAACATTCATACGTGCACAATAAGAT
CAACTCATTTAAATGTAAGGAATGTGGTAGATGCTTTGCACACAAAAATT
GTTTCGATTATCACATCAAGACTCACaaacgaaaaaaacttcttctCCAA
TTAATAGAACGAGAAAAACCTATCCAATGTATCAAATGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACA
TACTGGACAAAAGCCATTCAAGtgtgaagagtgtggtaaatgttttcaaa
ggaaagaaattttaaaaattcacaTGAGAATACATACGGGACAAAAGCCA
TTAAAGtgtgaagagtgtggtaaaTGTTTTCAAAGGAAagacattttaaa
atttcatattaGAATACATACTGGAGAAAAACCTTTTAAGTGCCAAGAGT
GTGGTAAACGATTTTCTCAACGAGGTAATGTGACACGACATTCAAACGTA
CACGATGGAGTCAAATCATTTAAATGTAAGGCATGTGATAAGTGCTTTTC
CCGAAAAGATACTTTGAATTTTCACATCAAGAGTCATAAGTGTAAAAAAC
ATGTCCAAATTGAAGAACAAGACAATGCTTTCTGATGTAACAAACGTAAT
AAATGTTTTAACAGTTTAAGTCATTTGACTGCTCATGTTAAAATCCGCCC
CGAAGAAATTGTTCCGACCGATGGTAAAAGTGAATCCAAAGAATTGTCAA
CTAAAAAACATCAAGATATAAATTTATTTAATGTTGCTAGTTTGATTGTC
GAGAACGAAGAGACGAAGTTAAAGAAAATCGATTATTCGAAGTATTGAGT
ATattttatgtgcagttgatatTATGCGAAAAATAGAGTATTTTTACAAG
Gtagttgtttattttattttttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024782XLOC_024782Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040679-exon-sc0002523-1491911889:8325..8343TCONS_00040679-exon-sc0002523-1491911889:8325..8343Clytia hemisphaericaexon
TCONS_00040679-exon-sc0002523-1510915933:8325..8343TCONS_00040679-exon-sc0002523-1510915933:8325..8343Clytia hemisphaericaexon
TCONS_00040679-exon-sc0002523-1575043694:8325..8343TCONS_00040679-exon-sc0002523-1575043694:8325..8343Clytia hemisphaericaexon
TCONS_00040679-exon-sc0002523-1491911889:9274..9948TCONS_00040679-exon-sc0002523-1491911889:9274..9948Clytia hemisphaericaexon
TCONS_00040679-exon-sc0002523-1510915933:9274..9948TCONS_00040679-exon-sc0002523-1510915933:9274..9948Clytia hemisphaericaexon
TCONS_00040679-exon-sc0002523-1575043694:9274..9948TCONS_00040679-exon-sc0002523-1575043694:9274..9948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002523supercontigsc0002523:8325..9948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23242	1.84634	0	0	0.325518	0	0.0940459	0	0	0.0763537	0.296443	0	0	0	0	0.0445755	0	0.0283893	0	0	0.429937	0	1.47701	1.95684	1.61101	0.747737	0	0	0.214424	0.485928
Blast
[Close]
BLAST of TCONS_00040679 vs. Swiss-Prot (Human)
Match: ZN519 (Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.661e-41
Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:    7 HMRMHTGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHIKSHKCKKHVQIEEQDNAF*CNKRNKCFNSLSHLTAHVKIRPEE 477
            H R+HTG+KPFKC+ECGK F R   L  H RIHTG++  KCEECGK F R   L  H RIHTGEKPF+C+ECGK F++   VT+H  +H G K FKCK C K F+R   L  H + H  +KH         F C +  K FN  SHLT H +I   E
Sbjct:  310 HQRIHTGEKPFKCKECGKAFNRGSYLTQHQRIHTGERAFKCEECGKAFNRGSYLTQHQRIHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQRIHTGEKH---------FKCKECGKAFNRGSHLTRHQRIHTGE 457

HSP 2 Score: 142.51 bits (358), Expect = 4.870e-39
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:    7 HMRMHTGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHIKSHKCKKHVQIEEQDNAF*CNKRNKCFNSLSHLTAHVKIRPEE 477
            H R+HTG++ FKCEECGK F R   L  H RIHTG+KP +C+ECGK F R   +  H R+HTGEKPFKC+ECGK F++  ++T+H  +H G K FKCK C K F+R   L          +H +I   + +F C +  K F   SHLT H ++   E
Sbjct:  338 HQRIHTGERAFKCEECGKAFNRGSYLTQHQRIHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQRIHTGEKHFKCKECGKAFNRGSHLT---------RHQRIHTGEKSFKCEECGKAFIWGSHLTQHQRVHTGE 485

HSP 3 Score: 113.235 bits (282), Expect = 1.734e-28
Identity = 71/178 (39.89%), Postives = 98/178 (55.06%), Query Frame = 1 
Query:    1 KVHMRMHTGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHIKSH------KCK-------------KHVQIEEQDNAF*CNKRNKCFNSLSHLTAHVKIRPEE 477
            K H  ++TG+K  K +E GK F R   L  H +IHTG+KP KC++C K F +   L  H RIHTGEKPFKC+ECGK F++   +T+H  +H G ++FKC+ C K F+R   L  H + H      +CK             +H ++   +  F C +  K FN  SHLT H +I   E
Sbjct:  253 KGHKIINTGEKSVKYKERGKAFTRGLHLG-HQKIHTGEKPYKCKKCDKAFNKSSHLAQHQRIHTGEKPFKCKECGKAFNRGSYLTQHQRIHTGERAFKCEECGKAFNRGSYLTQHQRIHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQRIHTGE 429

HSP 4 Score: 76.6406 bits (187), Expect = 5.189e-16
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    7 HMRMHTGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHT 192
            H R+HTG+K FKC+ECGK F R   L  H RIHTG+KP KC+ECGK F R+  L  H  IHT
Sbjct:  478 HQRVHTGEKFFKCKECGKAFTRSSHLTQHQRIHTGEKPFKCKECGKAFNRRSTLTQHQIIHT 539
The following BLAST results are available for this feature:
BLAST of TCONS_00040679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5191.661e-4150.96Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 ... [more]
back to top