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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040678 ID=TCONS_00040678|Name=TCONS_00040678|organism=Clytia hemisphaerica|type=transcript|length=470bpRun BLAST on NCBI transcript from alignment at sc0002523:3721..10717+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040678 ID=TCONS_00040678|Name=TCONS_00040678|organism=Clytia hemisphaerica|type=transcript|length=6997bp|location=Sequence derived from alignment at sc0002523:3721..10717+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040678 vs. Swiss-Prot (Human)
Match: ZNF66 (Putative zinc finger protein 66 OS=Homo sapiens GN=ZNF66 PE=5 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 1.342e-41 Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC+ECGK FK + L KH RIHTGE+P+KC+ECGK FSRS +LT H I+H+ +P++CE+CGK F ++L +H K+HT EKP+KCEECGK FK + L H ++HT K +KCEECGK F
Sbjct: 395 KPYKCEECGKVFKHSSPLSKHKRIHTGEKPYKCEECGKAFSRSSILTTHKIIHTGEKPYECEDCGKAFNRSSNLTKHKKIHTGEKPYKCEECGKAFKCSSILTTHKRIHTADKPYKCEECGKDF 518 HSP 2 Score: 136.732 bits (343), Expect = 6.489e-38 Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC+ECGK+F ++ L H RIHTGE+P+KC+ECGK F S LT+H I+H+ +P+KCE CG+ F SL H +HT +KP+KCEECGK FK + L +H ++HT +K +KCEECGK F
Sbjct: 311 KPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGKGFKYSSTLTKHKIIHTGEKPYKCEECGEAFKYSCSLTAHKIIHTGKKPYKCEECGKVFKHSSPLSKHKRIHTGEKPYKCEECGKAF 434 HSP 3 Score: 135.576 bits (340), Expect = 1.703e-37 Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC++CGK+F + +L H +IHTGE+P+KC+ECGK F RS +LT H +H+ +P+KCE CGK F +SL H +HT EKP+KCEECGK F + L H ++HT +K +KCEECGK F
Sbjct: 227 KRYKCEDCGKAFNRSSNLTTHKKIHTGEKPYKCEECGKAFKRSSILTTHKRIHTGEKPYKCEECGKVFKYLSSLSTHKIIHTGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGKGF 350 HSP 4 Score: 134.035 bits (336), Expect = 5.419e-37 Identity = 69/139 (49.64%), Postives = 95/139 (68.35%), Query Frame = 3
Query: 66 RKNNLVTKER----GKGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
R +NL T ++ K +KC+ECGK+FK + L H RIHTGE+P+KC+ECGK F L+ H I+H+ +P+KCE CGK F + L H ++HT EKP+KCEECGK FK ++L +H +HT +K +KCEECG+ F
Sbjct: 240 RSSNLTTHKKIHTGEKPYKCEECGKAFKRSSILTTHKRIHTGEKPYKCEECGKVFKYLSSLSTHKIIHTGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGKGFKYSSTLTKHKIIHTGEKPYKCEECGEAF 378 HSP 5 Score: 132.494 bits (332), Expect = 2.073e-36 Identity = 64/124 (51.61%), Postives = 87/124 (70.16%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC+ECGK FK++ L KH IHTGE+P+KC+ECG+ F S LT H I+H+ +P+KCE CGK F + L +H ++HT EKP+KCEECGK F + L H +HT +K ++CE+CGK F
Sbjct: 339 KPYKCEECGKGFKYSSTLTKHKIIHTGEKPYKCEECGEAFKYSCSLTAHKIIHTGKKPYKCEECGKVFKHSSPLSKHKRIHTGEKPYKCEECGKAFSRSSILTTHKIIHTGEKPYECEDCGKAF 462 HSP 6 Score: 132.109 bits (331), Expect = 2.746e-36 Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC+ECGK FK+ L H IHTGE+P+KC+ECGK F+ S LT H +H+ +P+KCE CGK F ++L +H +HT EKP+KCEECG+ FK SL H +HT KK +KCEECGK F
Sbjct: 283 KPYKCEECGKVFKYLSSLSTHKIIHTGEKPYKCEECGKAFNWSSHLTTHKRIHTGEKPYKCEECGKGFKYSSTLTKHKIIHTGEKPYKCEECGEAFKYSCSLTAHKIIHTGKKPYKCEECGKVF 406 HSP 7 Score: 132.109 bits (331), Expect = 3.356e-36 Identity = 62/124 (50.00%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC+ECG++FK++C L H IHTG++P+KC+ECGK F S L++H +H+ +P+KCE CGK F + L H +HT EKP++CE+CGK F ++L +H K+HT +K +KCEECGK F
Sbjct: 367 KPYKCEECGEAFKYSCSLTAHKIIHTGKKPYKCEECGKVFKHSSPLSKHKRIHTGEKPYKCEECGKAFSRSSILTTHKIIHTGEKPYECEDCGKAFNRSSNLTKHKKIHTGEKPYKCEECGKAF 490 HSP 8 Score: 128.257 bits (321), Expect = 7.412e-35 Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
K +KC ECGK+F + L H IHTGE+ +KC++CGK F+RS LT H +H+ +P+KCE CGK F + L H ++HT EKP+KCEECGK FK +SL H +HT +K +KCEECGK F
Sbjct: 199 KPYKCIECGKAFNRSSHLTTHKIIHTGEKRYKCEDCGKAFNRSSNLTTHKKIHTGEKPYKCEECGKAFKRSSILTTHKRIHTGEKPYKCEECGKVFKYLSSLSTHKIIHTGEKPYKCEECGKAF 322 HSP 9 Score: 128.257 bits (321), Expect = 7.487e-35 Identity = 63/118 (53.39%), Postives = 83/118 (70.34%), Query Frame = 3
Query: 117 ECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
ECGK+F + H +IHTGE+P+KC ECGK F+RS LT H I+H+ + +KCE+CGK F ++L H K+HT EKP+KCEECGK FK + L H ++HT +K +KCEECGK F
Sbjct: 177 ECGKAFNRSSTFTTHKKIHTGEKPYKCIECGKAFNRSSHLTTHKIIHTGEKRYKCEDCGKAFNRSSNLTTHKKIHTGEKPYKCEECGKAFKRSSILTTHKRIHTGEKPYKCEECGKVF 294 HSP 10 Score: 114.005 bits (284), Expect = 1.224e-29 Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 3
Query: 99 KGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGK 464
K ++C++CGK+F + +L KH +IHTGE+P+KC+ECGK F S +LT H +H++ +P+KCE CGK F ++L H K+HT KP KC +CGK F + ++L H +H +KCE K
Sbjct: 451 KPYECEDCGKAFNRSSNLTKHKKIHTGEKPYKCEECGKAFKCSSILTTHKRIHTADKPYKCEECGKDFKYSSTLTRHKKIHTGGKPHKCNKCGKAFISSSNLSRHEIIHMGGNPYKCENVAK 572 HSP 11 Score: 106.301 bits (264), Expect = 7.776e-27 Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 3
Query: 72 NNLVTKERGKGFKCKECGKSFKFNCDLKKHLRIHTGERPFKCQECGKCFSRSDVLTQHLIVHSSIRPFKCENCGKYF*SKTSLKEHIKLHTEEKPFKCEECGKCFKTKTSLKEHIKLHTEKKSFKCEECGKCF 470
N +T + K F+C + GK F + +H HTG+ P K ECGK F+RS T H +H+ +P+KC CGK F + L H +HT EK +KCE+CGK F ++L H K+HT +K +KCEECGK F
Sbjct: 134 NQCLTTTQSKMFQCDKHGKVFHQFSNTNRHKIRHTGKNPCKFTECGKAFNRSSTFTTHKKIHTGEKPYKCIECGKAFNRSSHLTTHKIIHTGEKRYKCEDCGKAFNRSSNLTTHKKIHTGEKPYKCEECGKAF 266 The following BLAST results are available for this feature:
BLAST of TCONS_00040678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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