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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040672 ID=TCONS_00040672|Name=TCONS_00040672|organism=Clytia hemisphaerica|type=transcript|length=529bp
GTCCAAGCCTAAATGCGAGACCAAAAAACACacgaaaaaagttgaacttc
tcTCCATCAAAACAGCACGCCAAAAATACCGACACCATGCTTCAATGCGA
AGAATGTGACAAATGGCGTCtcgtattttcaaaaaagaagatcACTAAAG
CCCAAcaaaagaatttgaagaaatttctgGAGAAAATCAGCTACACATGT
GGTTTTCTGTTTGATGATGTACAAATGCCTCATGGTATCGAGATTTTCGT
GAGAGACCATGATTGTGTCGATATCGTTGAGAAGCTGTACTACTCCTGTG
GGTACGAACCCATTTGTATCTATTGTGGGTGGTATCTCTCGAACACGGAT
GAGGAAGCTGATTCGTATCCACAATGCGTTGACTGCAATCAACCACCAGT
TATGAAAAGGaataattgaaaattattgGAACATTTCTTATCATTTTCAA
TCATTGTTTGTATTATTCTCCGTTCATATAATTTTTGTCTTATGATGTAT
TCATATAAAAGTTGAAAGATGGTTTGTTT Run BLAST on NCBI protein sequence of TCONS_00040672-protein >TCONS_00040672-protein ID=TCONS_00040672-protein|Name=TCONS_00040672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
PSLNARPKNTRKKLNFSPSKQHAKNTDTMLQCEECDKWRLVFSKKKITKA
QQKNLKKFLEKISYTCGFLFDDVQMPHGIEIFVRDHDCVDIVEKLYYSCG
YEPICIYCGWYLSNTDEEADSYPQCVDCNQPPVMKRNN Run BLAST on NCBI transcript from alignment at sc0002520:13089..13829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040672 ID=TCONS_00040672|Name=TCONS_00040672|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0002520:13089..13829+ (Clytia hemisphaerica)
GTCCAAGCCTAAATGCGAGACCAAAAAACACacgaaaaaagttgaacttc
tcTCCATCAAAACAGCACGCCAAAAATACCGACACCATGCTTCAATGCGA
AGAATGTGACAAATGGCGTCtcgtattttcaaaaaagaagatcACTAAAG
CCCAAcaaaagaatttgaagaaatttctgGAGAAAATCAGCTACACATGT
GGTTTTCTGTTTGGTAAGAAGAAGAGATGTTTTCTTCTCTACTTACATTC
TTCTAAACATTTCTCAGTTTGGCCATCTCGAATCGGCCATTATCAGTCGC
TACGTGATTGAACTTAGACTTTCTACATGAAGAATTTCCCGAGGTATCAA
AGTTATTACTTAAGGGTGTAACTCAATTTTtaagttaaaaagaaaagagt
TTAATTTGCTGATTTTCTTCCATAGATGATGTACAAATGCCTCATGGTAT
CGAGATTTTCGTGAGAGACCATGATTGTGTCGATATCGTTGAGAAGCTGT
ACTACTCCTGTGGGTACGAACCCATTTGTATCTATTGTGGGTGGTATCTC
TCGAACACGGATGAGGAAGCTGATTCGTATCCACAATGCGTTGACTGCAA
TCAACCACCAGTTATGAAAAGGaataattgaaaattattgGAACATTTCT
TATCATTTTCAATCATTGTTTGTATTATTCTCCGTTCATATAATTTTTGT
CTTATGATGTATTCATATAAAAGTTGAAAGATGGTTTGTTT Coding sequence (CDS) from alignment at sc0002520:13089..13829+ >TCONS_00040672 ID=TCONS_00040672|Name=TCONS_00040672|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at sc0002520:13089..13829+ (Clytia hemisphaerica)
CCAAGCCTAAATGCGAGACCAAAAAACACacgaaaaaagttgaacttctc
TCCATCAAAACAGCACGCCAAAAATACCGACACCATGCTTCAATGCGAAG
AATGTGACAAATGGCGTCtcgtattttcaaaaaagaagatcACTAAAGCC
CAAcaaaagaatttgaagaaatttctgGAGAAAATCAGCTACACATGTGG
TTTTCTGTTTGATGATGTACAAATGCCTCATGGTATCGAGATTTTCGTGA
GAGACCATGATTGTGTCGATATCGTTGAGAAGCTGTACTACTCCTGTGGG
TACGAACCCATTTGTATCTATTGTGGGTGGTATCTCTCGAACACGGATGA
GGAAGCTGATTCGTATCCACAATGCGTTGACTGCAATCAACCACCAGTTA
TGAAAAGGaataattgaCCAAGCCTAAATGCGAGACCAAAAAACACacga
aaaaagttgaacttctcTCCATCAAAACAGCACGCCAAAAATACCGACAC
CATGCTTCAATGCGAAGAATGTGACAAATGGCGTCtcgtattttcaaaaa
agaagatcACTAAAGCCCAAcaaaagaatttgaagaaatttctgGAGAAA
ATCAGCTACACATGTGGTTTTCTGTTTGATGATGTACAAATGCCTCATGG
TATCGAGATTTTCGTGAGAGACCATGATTGTGTCGATATCGTTGAGAAGC
TGTACTACTCCTGTGGGTACGAACCCATTTGTATCTATTGTGGGTGGTAT
CTCTCGAACACGGATGAGGAAGCTGATTCGTATCCACAATGCGTTGACTG
CAATCAACCACCAGTTATGAAAAGGaataattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040672-exon-sc0002520-1491911889:13089..13301 | TCONS_00040672-exon-sc0002520-1491911889:13089..13301 | Clytia hemisphaerica | exon |
| TCONS_00040672-exon-sc0002520-1510915933:13089..13301 | TCONS_00040672-exon-sc0002520-1510915933:13089..13301 | Clytia hemisphaerica | exon |
| TCONS_00040672-exon-sc0002520-1575043694:13089..13301 | TCONS_00040672-exon-sc0002520-1575043694:13089..13301 | Clytia hemisphaerica | exon |
| TCONS_00040672-exon-sc0002520-1491911889:13514..13829 | TCONS_00040672-exon-sc0002520-1491911889:13514..13829 | Clytia hemisphaerica | exon |
| TCONS_00040672-exon-sc0002520-1510915933:13514..13829 | TCONS_00040672-exon-sc0002520-1510915933:13514..13829 | Clytia hemisphaerica | exon |
| TCONS_00040672-exon-sc0002520-1575043694:13514..13829 | TCONS_00040672-exon-sc0002520-1575043694:13514..13829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002520 | supercontig | sc0002520:13089..13829 + |
Blast
The following BLAST results are available for this feature:
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