TCONS_00040671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040671
Unique NameTCONS_00040671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040671 ID=TCONS_00040671|Name=TCONS_00040671|organism=Clytia hemisphaerica|type=transcript|length=834bp
aaattGTAGAACCTGTTAAAGCTGTTAGAAAATTACGATTTGCCATCTTG
AGCATCTTGAAAccccaaaattttgaaacagtGAGAGTGAAACGAATATT
TATTGACAATAATTAAATTGATTGCAAATTCTATGTCTAtcatttttcca
tattttttcatcatgtatataaaaatgtaaatacaCCCTAATATTTGTTA
CATATAGTCATTGAATATTATAAAAACTCAAAGCTATTATCTACAGCTTA
ACCTTGTATATAGTTATAACTTCTTTCAACTTGTAAAAACATGTATAGTT
GTAGCCGTCAAATGTATAAATAATGATCGTTTAATTGTCTCACTTTACTT
CTCTCTCTCATTGGTAGTATCATCAGTAACACAAATGCTGCAGTCCTTGC
CTTTTTGATATTACAAGGGTCTCACAGAGAATCGCCAaatattttaaggt
ttttgTAAAAGTGAGCGTTCTTAGGATAATTTGGCTTTTTTATCTTTAGG
AGGTTCAGTTTCATCTTCATCCTCTTCAGCACCACATAGATCTTCTTCTT
CATCGCTTCCATCTGACTTTCCATTTTTCGTGGAGATGACCTCTGCTTTC
TCCTTGGCTACAACATCTTTTAAATAGTCTTCATTTGCCTtctttaagaa
tttaattgatTTAACTGTGTTGCTAATATCCTTCGAACCAAATTTGTCGC
ATGATATTTCTTTAATAACTCCTGAACCTCGGGAAATTATGATTTGAAAG
TCCCCCATTTGAGATTCTACTCTCTGTAACACTCACAAAATATGCCAGTT
ACTTggtctaccattttgtttgtttgtattttGC
Run BLAST on NCBI

transcript from alignment at sc0002518:15296..16129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040671 ID=TCONS_00040671|Name=TCONS_00040671|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0002518:15296..16129 (Clytia hemisphaerica)
GCaaaatacaaacaaacaaaatggtagaccAAGTAACTGGCATATTTTGT
GAGTGTTACAGAGAGTAGAATCTCAAATGGGGGACTTTCAAATCATAATT
TCCCGAGGTTCAGGAGTTATTAAAGAAATATCATGCGACAAATTTGGTTC
GAAGGATATTAGCAACACAGTTAAatcaattaaattcttaaagaAGGCAA
ATGAAGACTATTTAAAAGATGTTGTAGCCAAGGAGAAAGCAGAGGTCATC
TCCACGAAAAATGGAAAGTCAGATGGAAGCGATGAAGAAGAAGATCTATG
TGGTGCTGAAGAGGATGAAGATGAAACTGAACCTCCTAAAGATAAAAAAG
CCAAATTATCCTAAGAACGCTCACTTTTAcaaaaaccttaaaatattTGG
CGATTCTCTGTGAGACCCTTGTAATATCAAAAAGGCAAGGACTGCAGCAT
TTGTGTTACTGATGATACTACCAATGAGAGAGAGAAGTAAAGTGAGACAA
TTAAACGATCATTATTTATACATTTGACGGCTACAACTATACATGTTTTT
ACAAGTTGAAAGAAGTTATAACTATATACAAGGTTAAGCTGTAGATAATA
GCTTTGAGTTTTTATAATATTCAATGACTATATGTAACAAATATTAGGGt
gtatttacatttttatatacatgatgaaaaaatatggaaaaatgaTAGAC
ATAGAATTTGCAATCAATTTAATTATTGTCAATAAATATTCGTTTCACTC
TCactgtttcaaaattttggggTTTCAAGATGCTCAAGATGGCAAATCGT
AATTTTCTAACAGCTTTAACAGGTTCTACaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024779XLOC_024779Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040671-exon-sc0002518-1491911889:15296..16129TCONS_00040671-exon-sc0002518-1491911889:15296..16129Clytia hemisphaericaexon
TCONS_00040671-exon-sc0002518-1510915933:15296..16129TCONS_00040671-exon-sc0002518-1510915933:15296..16129Clytia hemisphaericaexon
TCONS_00040671-exon-sc0002518-1575043694:15296..16129TCONS_00040671-exon-sc0002518-1575043694:15296..16129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002518supercontigsc0002518:15296..16129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.0047	49.4867	33.7426	33.8293	12.6307	12.7031	19.4855	17.9688	24.7781	16.6494	13.2848	17.428	11.0614	9.64469	9.37971	9.68537	22.2865	17.8201	4.70666	4.79889	14.7087	14.2952	32.8028	29.5858	16.2724	16.4809	11.5975	9.55281	16.6331	18.2303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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