TCONS_00040669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040669
Unique NameTCONS_00040669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040669 ID=TCONS_00040669|Name=TCONS_00040669|organism=Clytia hemisphaerica|type=transcript|length=378bp
aaacgttGCCCAATCGGGAGTTTGTCTTAAATTCGGGTAATAAAGCAGAC
AAACGAAAGTGATTCCAAAAGAAAATGGCCGCTCCTGCACTTTCAGATGA
AGATTTTAACAGACTCCAGAATCAACTGATCGAACTACGCACACAGAATT
ATGAACTCGGAAATAAAGTGAAGAAATTGGAAACagaaaatgcCGGTCTT
AACGAGAAACATACAGTGCAGGAGAAAGAAATCACTAAGCTCCAAAGACT
ATCGAAGTTTCCTGGTTTTCAGGCCATCACAAAAAGCAAATCTAAAAAGg
ACATTGCAGAATTGATGGAAGAGAATGAGCGTTTGTCACAACAAATGCAG
AGACATGAAGACGACTTCAAATTGCAGA
Run BLAST on NCBI

protein sequence of TCONS_00040669-protein

>TCONS_00040669-protein ID=TCONS_00040669-protein|Name=TCONS_00040669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MAAPALSDEDFNRLQNQLIELRTQNYELGNKVKKLETENAGLNEKHTVQE
KEITKLQRLSKFPGFQAITKSKSKKDIAELMEENERLSQQMQRHEDDFKL
Q
Run BLAST on NCBI

transcript from alignment at sc0002518:8603..15198-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040669 ID=TCONS_00040669|Name=TCONS_00040669|organism=Clytia hemisphaerica|type=transcript|length=6596bp|location=Sequence derived from alignment at sc0002518:8603..15198- (Clytia hemisphaerica)
AAACGTTGCCCAATCGGGAGTTTGTCTTAAATTCGGGTAATAAAGCAGAC
AAACGAAAGTGATTCCAAAAGAAAATGGCCGCTCCTGCACTTTCAGATGA
AGATTTTAACAGACTCCAGGTAACATTGTCATTGATCTTATATTGTTTAT
TTCTTACTACAATTAATTTATGTATTTTCTCCTGAATGCAAATACGTCTA
TTTACGTACGTTTATTTTCCAGTCATCGCAAACACTGGTTAAGACTTAAA
GACTAAAGTGTGGCTAAACACACGACCCTGGACACCGCCGTACATTGTAC
GGTGTTGTACGGTGGGGCTTGATTTAAATGTCCGGTGGGAATTAAAGGTT
AACTTTGAAAACACCGTACATTTTCCCACCGTACATTAAATTTCCCACCG
TACAATAGTACGGTGGGAATGCGATCGTGAAAGACAAGTTCCGTGGTCAA
ACTTAATGTACCAAAGAAAGTCTTTCCGACTTAGAAGTTTTTCAGTAAGT
CCGACCACGGTTGATTATCTAAAAATTTGCATGCTTTCTGAAACTGAAAT
CAATTTGGTACAGTGGTGAAAAAGGTTAACTCGAAATCCACCGTACACCC
CACCGTACCCACCGTACACCCACCGTACAACACCGTACAATGTACGGCGG
TGTCCAGGGTCGTGGCTAAACGAACAATCAATGCTCTTGATAGGGCGGTG
GTTTATATAATTTTTTAGGCGTATCCCAATCCCTCTAAGCCATTTTTTCA
TGTGAAAATTCTCAATTATACGTCTTGATTTGCGAAAGTTTATGCTCGCA
AAAAATATTTTTCCGTTAAATTTGCGCGAAAGTAAATCCAGACCCCCGCG
CTCGATAGGATCGATCATCGGAACGGCTCGATGACGGATCGATATGTGAT
CGATGGATTACTTATCGATCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACACTACAACAAGTTCTCCAAAAAACTTCAATCTTAATTTATCTGTTTTT
TAAGCAGACATAAAATTAGGGTGATATTTCATTAAGCCAGCCGTGACGAG
TGGGGATATGTCGTCAAACGCACGCTGGGTTATAGTGTGACATGCGTTTT
TCATCAATCCATTTAGTATAGTAAGATAGTTAAGTTTAGTTTTATTTTAT
ACTAGTTTACTTGCTTACAAACTCTATCTATCCAAAAAGTGAAGATTACA
CAGTAGGGGCCATTTCGAGAAATTGTGCGAACTTTTTTTCTGGGCCACTT
TGCGATTTTGAACTTGAAAAACTGGTGGCGAAATTCCAAAACTTTGTTGC
CGGAACATCAATGTTCAGGTCAAAAGAATGTTTTGCTATTTTGGCCCGAG
CATGACCTAAAAAGATATTTGAGTATGTTTTGACTATGTTGGTCTTAAAA
TTCTCAACCACAATTGTCCTTTACCCAATTGAACCGCCTTTTTGTAGGTA
GTGGAAGTACCTCAATTTCAAGCATGTTCAAAGTTCACAATCACGACTTT
CTGTTTATTACTGCAACCAAACGAGTGAGAACAAGTCATAAAACTAAAAG
TCAGCGCTCCGTGGTTGTGACGAAATCGTTAAGATAAAATGACATGCTTT
TTAACAACTTTTCTCTACGTCATTTTTTTAAAGCCTCTTCGTAGGAGAAT
GTGTTTTTCTATAAGAAATTTTTAATAACACTTCATGGCAGATTAAAAAG
ACAATCAGAAAAAGAAAGCATTTCATTTTCGAATTTATGGGGAAGAATGA
AATTTTCAGAAGATGCTTTATTTGATATGATTTGATAGGATTCCCATTTC
TGTAAATTTGTGATTCCCATGGTTGCTAAATGGTGGCTAGGGGTATTTAT
TTGTTCTTTTGCTATTTTCTTTTGTTCTATGTGACGTAAAACGCTTCACA
AATCGAAGTACTTCCACCAACTGTTTTTGTGACCTCTGATTTCTCTGGGC
TAGGGCCAACCCCACCCAAGTCAAATTCTACTTTGTAAAAGTCATTGGAG
AACAGGACAGTGTTTTGTCTTATTTTTCTGAGCACTTTTTTATGGATACC
AGTCATTATTGATTAAGTTTTTGAAAAACGTCTCTTTACCATGATAATTT
TAAAAAGCCTGCTTTGCTCCCTGTCATTTGTGAGAAATTTTAAGTGTATT
TTTACTTTTATGACAAATTATACAAATTATGTGCTGTAATTTGGTCTAAT
GTCTGCATTCCTCATGTAATTCCACCACCCTTCTTTAAAGAATTAAAAAG
TAGGTGGGAATCACTGATTGAAATTTCTTTTCTGATAGTTTATTAGCAAT
CAGTGATTCCAACCTTTTATTATTTCCAGGTTTAAAGAAGGGTGTCAGAA
TTAGATATGTTAATGTGTTGTTGGGATGTTGACATCAGACCAACTTAAAG
TATTTTCCAAGAAAAATGAATGAGACTATTTTCTTGTAAATTGAATGAAA
CATTAACTAAAACTGATTAAAAATATTTTCCTGTATTTTCTAAGGAAAAT
TATATACCTTAAATAGTTGTATTTTCCAAGGAAAATTAGATATTTTAAAA
CTTATTTATTGTTCTATTTATTAAAAATGAACCAAGCAGTACACCATAAA
CATATTAATTTCCATTCTTAGTGAAGACACAATGAGATGACCAAACTTTA
ATTTTAAAGCGACTGATTGATAAAACCTAGGTAAATTCTTTTTATTCAGA
ATCAACTGATCGAACTACGCACACAGAATTATGAACTCGGAAATAAAGTG
AAGAAATTGGAAACAGGTAATTTTTTAAATAATTTTAAATAATAGCTTTC
CAGTATTATGATGTTATGTATGTTACGAATAAAAAATTCCTGTCAAATTA
TATTCACTTTGGGTGGTATAATGCAGGTGTATGCATTTCATCCTTATTGA
GAACATGCACTGCATTCTGCTCCCTGACTGGCCGAATCAATCTTAGCATC
TCAATTAATTATGGCTCAAACCTAGAGAAACAGTGGATAAGACAAATATA
ATATAGAGAAAGGATGAAAAATTTCTTTTATTACTCTAGCATGGTTTGAT
TTTGTGATTTTTTATTCTCTCACTATTCAACCTTCTTATCCTAAGGGAAC
TACTGTCTGAAGCCTGACATTTTAGTTAAAGAGTTGAACCCCTGTTTTTT
TATTTTAGAAAATGCCGGTCTTAACGAGAAACATACAGTGCAGGAGAAAG
AAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTTCAGGTGAGA
AATGTAGGCTTTTTTTTAATTTTTCATCTGAGTCTGCTTTGCTATGCAAA
AAATTAACCAACATGAAGGCTTCGTAGTTCAATAATATGAATAATAATTT
GAAAGATTTCATCGTCATTGCTTTTGTTTAATTGGTCATGGTTTCAATTA
TGAGTCAAGTATACAAATTTTTCTTATCTTATCCGTGCTGTATACGAAAA
GTAAAAATATTGATTTCTTTAATTTCTAGGCCATCACAAAAAGCAAATCT
AAAAAGGTAACTATATCTCATATCTCAAATATATCCCAAACATCAAATAG
GTTTTAATAAAACACCAAAAGGTTATCCAGATAAAAATTTGAGGAATTTA
GTACATTGGTATTAAAATTAGCAATTTTATAAATTTCATAAACCTTTTTC
ACAATTTAACAAAAAAAGTTTGGGTTTTTTATTTAGTCAAATAAATGTCC
AAAATATTTGCAACAGAAGTTTCGCTTTCTCTTTCTAAAGATATTTCACA
TATATTTTTGTTAGCAATTTTTGTCCAAAATCCTTGGGGAATATGTATTT
TTAAAGATTCCCCCCGAATGCCAAGAAAGGGGGGGTGTCATTTAAGACCC
CTTTCTGCACCTCCTGTTTTTACTGCCGTCATTTCAAAGAATGTATAATG
ATAGTTGATGTTCGTTATGGTTAACACAAATTTTTTGAAAATCATGAAAA
TGTCTAAGATATAGATTTTCAAAAGGTCAAGTCTATCTTAAAAATTTGGT
TTTTGTTCACTGACACTTCTAAATTTTTATCTGGCCTGCCTACAACAACA
ATCCTAACCAGACATTATTTTCAAATCTTTTAGGACATTGCAGAATTGAT
GGAAGAGAATGAGCGTTTGTCACAACAAATGCAGGTATGATTAATCCATG
TCTAACAGTCTCTCACTCACATTAAAAAAATGTAATAGGTAACTTACCCT
TTCTTTACTTAGAACCCTTTTCAAAATTCTTCTACAACACTTTTGCACTA
ACTGATTGGTTACAAGTGATGTATTTGGTAAAAAAAAATAAAGATAATTT
TGTTATGTAAATTTGGCTTAGCTTATTACAAGTTCTTTTTTTATTTCCTT
TATATTTGCTTTAGTGCTTTCAAAATGACGTTGGCCTTTTTCAAAAGTAT
TTCTCTTCTGCTCTTAATTTGCTCTTCAGGTTCAGCTCCATTCAACCTCA
TAAGCTTAAAAGAGGTCACCCTCTCAGAAGAATTCTACTTTTATTTCTAT
TTTCCTTTCCTTTTACAGAGACATGAAGACGACTTCAAATTGCAGA

Coding sequence (CDS) from alignment at sc0002518:8603..15198-

>TCONS_00040669 ID=TCONS_00040669|Name=TCONS_00040669|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0002518:8603..15198- (Clytia hemisphaerica)
AGACATGAAGACGACTTCAAATTGCAGGACATTGCAGAATTGATGGAAGA
GAATGAGCGTTTGTCACAACAAATGCAGGCCATCACAAAAAGCAAATCTA
AAAAGAAAATGCCGGTCTTAACGAGAAACATACAGTGCAGGAGAAAGAAA
TCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTTCAGAATCAACTG
ATCGAACTACGCACACAGAATTATGAACTCGGAAATAAAGTGAAGAAATT
GGAAACAGATGGCCGCTCCTGCACTTTCAGATGAAGATTTTAACAGACTC
CAGAGACATGAAGACGACTTCAAATTGCAGGACATTGCAGAATTGATGGA
AGAGAATGAGCGTTTGTCACAACAAATGCAGGCCATCACAAAAAGCAAAT
CTAAAAAGAAAATGCCGGTCTTAACGAGAAACATACAGTGCAGGAGAAAG
AAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTTCAGAATCAA
CTGATCGAACTACGCACACAGAATTATGAACTCGGAAATAAAGTGAAGAA
ATTGGAAACAGATGGCCGCTCCTGCACTTTCAGATGAAGATTTTAACAGA
CTCCAGAGACATGAAGACGACTTCAAATTGCAGGACATTGCAGAATTGAT
GGAAGAGAATGAGCGTTTGTCACAACAAATGCAGGCCATCACAAAAAGCA
AATCTAAAAAGAAAATGCCGGTCTTAACGAGAAACATACAGTGCAGGAGA
AAGAAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTTCAGAAT
CAACTGATCGAACTACGCACACAGAATTATGAACTCGGAAATAAAGTGAA
GAAATTGGAAACAGATGGCCGCTCCTGCACTTTCAGATGAAGATTTTAAC
AGACTCCAGAGACATGAAGACGACTTCAAATTGCAGGACATTGCAGAATT
GATGGAAGAGAATGAGCGTTTGTCACAACAAATGCAGGCCATCACAAAAA
GCAAATCTAAAAAGAAAATGCCGGTCTTAACGAGAAACATACAGTGCAGG
AGAAAGAAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTTCAG
AATCAACTGATCGAACTACGCACACAGAATTATGAACTCGGAAATAAAGT
GAAGAAATTGGAAACAGATGGCCGCTCCTGCACTTTCAGATGAAGATTTT
AACAGACTCCAGAGACATGAAGACGACTTCAAATTGCAGGACATTGCAGA
ATTGATGGAAGAGAATGAGCGTTTGTCACAACAAATGCAGGCCATCACAA
AAAGCAAATCTAAAAAGAAAATGCCGGTCTTAACGAGAAACATACAGTGC
AGGAGAAAGAAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGTTTT
CAGAATCAACTGATCGAACTACGCACACAGAATTATGAACTCGGAAATAA
AGTGAAGAAATTGGAAACAGATGGCCGCTCCTGCACTTTCAGATGAAGAT
TTTAACAGACTCCAGAGACATGAAGACGACTTCAAATTGCAGGACATTGC
AGAATTGATGGAAGAGAATGAGCGTTTGTCACAACAAATGCAGGCCATCA
CAAAAAGCAAATCTAAAAAGAAAATGCCGGTCTTAACGAGAAACATACAG
TGCAGGAGAAAGAAATCACTAAGCTCCAAAGACTATCGAAGTTTCCTGGT
TTTCAGAATCAACTGATCGAACTACGCACACAGAATTATGAACTCGGAAA
TAAAGTGAAGAAATTGGAAACAGATGGCCGCTCCTGCACTTTCAGATGAA
GATTTTAACAGACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024777XLOC_024777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040669-proteinTCONS_00040669-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040669-exon-sc0002518-1575043694:15080..15198TCONS_00040669-exon-sc0002518-1575043694:15080..15198Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1575043694:10383..10449TCONS_00040669-exon-sc0002518-1575043694:10383..10449Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1575043694:9905..9990TCONS_00040669-exon-sc0002518-1575043694:9905..9990Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1575043694:9643..9669TCONS_00040669-exon-sc0002518-1575043694:9643..9669Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1575043694:9015..9065TCONS_00040669-exon-sc0002518-1575043694:9015..9065Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1575043694:8603..8630TCONS_00040669-exon-sc0002518-1575043694:8603..8630Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:15080..15198TCONS_00040669-exon-sc0002518-1510915933:15080..15198Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:10383..10449TCONS_00040669-exon-sc0002518-1510915933:10383..10449Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:9905..9990TCONS_00040669-exon-sc0002518-1510915933:9905..9990Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:9643..9669TCONS_00040669-exon-sc0002518-1510915933:9643..9669Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:9015..9065TCONS_00040669-exon-sc0002518-1510915933:9015..9065Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1510915933:8603..8630TCONS_00040669-exon-sc0002518-1510915933:8603..8630Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:15080..15198TCONS_00040669-exon-sc0002518-1491911889:15080..15198Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:10383..10449TCONS_00040669-exon-sc0002518-1491911889:10383..10449Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:9905..9990TCONS_00040669-exon-sc0002518-1491911889:9905..9990Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:9643..9669TCONS_00040669-exon-sc0002518-1491911889:9643..9669Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:9015..9065TCONS_00040669-exon-sc0002518-1491911889:9015..9065Clytia hemisphaericaexon
TCONS_00040669-exon-sc0002518-1491911889:8603..8630TCONS_00040669-exon-sc0002518-1491911889:8603..8630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002518supercontigsc0002518:8603..15198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95213	5.08572	5.42429	4.25644	12.8457	11.6743	9.72087	14.4704	14.0786	9.75729	17.5047	16.8703	18.1911	16.3891	15.0556	13.6628	9.3048	11.5528	7.46963	9.051	12.7386	15.6786	7.05315	8.23113	15.9604	17.2895	6.45057	3.99276	5.998	5.67409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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