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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040667 ID=TCONS_00040667|Name=TCONS_00040667|organism=Clytia hemisphaerica|type=transcript|length=355bp
AAAACATTGGCTATTTATCTTGTCATATGTGAAATTGTAGATATAAAATT
GAAAAGTAAATTAACCTAACACACATACAACAATGTCATCACTAAATAAA
AGTGATAGCCCGAATCGGGATTCACCAGGAACCCTTTCGACGAAAAAAAG
TCCGATGGTATTGTATTTCGTAATTGTTGTTTTCGTCATTTCACTTGCTG
CTTTCATATTGGCGATGATCGCCTTTGTCGAAGACAAAACGAGTACAGGT
GTAACGAACGAGATTCAACGGCTACAGACAAACTTGACTGATATTCAAGG
ACAAGTGaTTGCAAGTCTTGAAGCAAGGATCGATGATTTATTAAAAAAGA
TTGTA Run BLAST on NCBI transcript from alignment at sc0002517:4971..7724- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040667 ID=TCONS_00040667|Name=TCONS_00040667|organism=Clytia hemisphaerica|type=transcript|length=2754bp|location=Sequence derived from alignment at sc0002517:4971..7724- (Clytia hemisphaerica)
AAAACATTGGCTATTTATCTTGTCATATGTGAAATTGTAGATATAAAATT
GAAAAGTAAATTAACCTAACACACATACAACAATGTCATCACTAAATAAA
AGTGATAGCCCGAATCGGGATTCACCAGGAACCCTTTCGACGAAAAAAAG
TCCGATGGTATTGTATTTCGTAATTGTTGTTTTCGTCATTTCACTTGCTG
CTTTCATATTGGCGATGATCGCCTTTGTCGAAGACAAAACGAGTACAGGT
AAGATTTATCTTATATATTTAAAAAATAAGAAATAATTACTATACTTTAC
TTTTACTTTGGGTAAAATGAGTGACATTCCTACAGGGTGTTTATTATATA
CGTAACCCTTTTGATAACTGTAACCTACTATCAATATGGCGTTAAATAAA
GATCCCACCATTACATGACCTCGAGGAGGTTTTAAACTCGGGACCTCTTC
TGAGCTATGTAGAATAATCTACAAATCGACATAAAAAACTTACCCTTAAA
GATGAAAATATTGGAGTAAGCAATCAATTTAATAATAAAAATGTATGAAA
GAAGCTTTATCTTAAATAAGTATTTTATTTATTATTGTCAAATAAAAAAA
GTTATTTGTCAGTTTCATTTCTTATTCATTGTATTATTTTCTTTCTAAAA
AAATATTTCTATAAATAACTTCTTAAATTTTAAACAGAACAATAATATAA
GAAGAAAACTAATAAAGTGATAAAGAAATGAAATTAACTAAGAAAAATAA
ATTTGTGCTGCGATTTTGCGATTACTTTTTAAACTTGAAGAGCTTTTCCA
TCATAACCCTAGGAACACATTTAAGATTGTTTATACGAGAATATTTTACG
CATATTTAATGTACTAGACTTTAAAGCGTTTGGGTTTTATGTAATTTCAC
TGAAAACTGTTGAACTCACTGGTAGCATTGAAATAGGTTGATAATAAAAA
AAACTCCAATAAACATCCGGATTCAATTTTTCAATTTTTCGATACAGGGC
GATAAGCATTTCCCTTTTTTGACCGGGGCGATCTTAGCCAAATTGAGCTT
TAGTATTACAAGCAGGGAGTATAAAAAGCATTAGAATTTGATGCTTAAAA
TAACAATAGTAGTCATAGCATCAAAAGATTTTACTGGTCTTTATATAAAA
AAAACTGTAACCCGGTGAAAATTTACCTCAAATTTTCCAACCTGGCGACT
TTTTTTAGTCAAAAATCTCCTCCGGTGAAATCCTGTTATTTTCTTAGCCA
CCCCGGTGAGCTTTTAAACTTTACCGGGTTACTGAGACAGGGGTGTCCAT
TTATTTGGAGCATCGTAATTTATGCAAGTAAGATTGATTGGCTGAAAAAT
TAAAAAAGTGTTCATACTCAATAACGAAAATCTAAAAAAACTTACGAAAA
TTGATAATAATGATAAATATTTTTATCGATAACCGTGTCTCACAGAAAGT
CGAAAAATTAATCTAATATTCTATTGTCGTTTTTTATGGTTTATGTTTAT
TGAGTTTCGAGATAGAAGACAATGAAAATTTCCATTATTAACGTATTACT
TATTTCCATTTTCCCAAATCACCAATAAAGTCGTAATGTATTTATTGTAA
ATTAATAAACGCTTCATAAAAACTAATATCTCAATAGTTGATAAATGTAT
GTGAATATATGTAAATTCTTCTATAAAATCTTACAATTAATTTGTTGTAA
TTTTCGTGAGACAAACTACGGTAATACCAATACTTTCATCGATTTTTTTG
TGTTTTAATTTTAAAAACATGCTTCTAGGATAATTCAAAAATTTCTTTTT
ACAAATATTTGATTTCCCAAAGGTGAGCAAGTTTGAAAAATAGATCAAAT
GAATGTTCGATTGTATAATAACATTTTAATTAAGAGTCAATCATGTCTCA
TTTTTAAATTTCTATAAATTATAATGTTTCATCCGAGGTGACATTTTATG
AAACACTTTGTAGTCTGTGGTGGTTAAGAATAAGAAAAAATGCAGAATTT
TCAATATTTATGATTTTAGAGACTTTTCTATAAAAAGTTTTTATTAAAAC
CTGACTATTACGGTCGTTGAAAAATTTGANATGATTTTAGAGACTTTTCT
ATAAAAAGTTTTTATTAAAACCTGACTATTGCGGTCGTTGAAAAATTTGA
TGTTTTTGTTTCCTCGACATTAAATCAGGATGAAATTATCAAGAGTAGCT
ATCATAATAATAGCCATGATAAGAAATAACAGAATAAAAAAATAAAAAAT
CGGTCAATTCTTATCAAATGAAATGAATTCTCTAATGTTTTAATAGACAT
TATCGGAGTTTTTTATTTTTCTAAAAAAGCAATGCATTGTAGGATTGTTT
CGAGTGTGTTACAATAAAAATCTCTTAGGAACTCCTCGAGGGAATCCTAT
TGTAATACACTCGAACAATCCCACAATGCATCGCTTTTTTAGAAGAATCA
AAAACTCCGATAAGGTCTATTCAAAATAAAATAAAAGATTTTTAAAATTA
AGAAACTTCAATTTGATGAAACAAAATGAAACCAATACTTTTATTTGATT
TATTTAAAAGGTGTAACGAACGAGATTCAACGGCTACAGACAAACTTGAC
TGATATTCAAGGACAAGTGGTAAGATATTTCTTAAAGAAGTGTATATTTG
TGCTGATAATATAACTTTTCTTTTTAAAATGAACTTTATTTTATTTTCAA
TTTAAGATTGCAAGTCTTGAAGCAAGGATCGATGATTTATTAAAAAAGAT
TGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040667-exon-sc0002517-1575043694:7477..7724 | TCONS_00040667-exon-sc0002517-1575043694:7477..7724 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1575043694:5106..5164 | TCONS_00040667-exon-sc0002517-1575043694:5106..5164 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1575043694:4971..5018 | TCONS_00040667-exon-sc0002517-1575043694:4971..5018 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1510915933:7477..7724 | TCONS_00040667-exon-sc0002517-1510915933:7477..7724 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1510915933:5106..5164 | TCONS_00040667-exon-sc0002517-1510915933:5106..5164 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1510915933:4971..5018 | TCONS_00040667-exon-sc0002517-1510915933:4971..5018 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1491911889:7477..7724 | TCONS_00040667-exon-sc0002517-1491911889:7477..7724 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1491911889:5106..5164 | TCONS_00040667-exon-sc0002517-1491911889:5106..5164 | Clytia hemisphaerica | exon |
| TCONS_00040667-exon-sc0002517-1491911889:4971..5018 | TCONS_00040667-exon-sc0002517-1491911889:4971..5018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002517 | supercontig | sc0002517:4971..7724 - |
Blast
The following BLAST results are available for this feature:
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