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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040666 ID=TCONS_00040666|Name=TCONS_00040666|organism=Clytia hemisphaerica|type=transcript|length=1107bp
aaatttcattaaaagtttaGGGCAACAAACAAATCAGATCCAACAAATCA
TTAACATTTTTCGGCCAATTCTTCCAATAAATCGAACTCGTCAACTGAAC
GAATCAAAACCAACTCTCGAACAGAGCGAAACGTTTCACGATGGGTACTC
TCAGTAGAATTACAATAACGAACCATGACTTTTCGACAAACATTATCTTT
ACCGATTTCAACCTTTGATACGATGCCAAACTGGTACGTTTTCGATAGTG
ATGTGtcgtttttttttgaaaaggacTATGTCTCCAATCTGAAATTGATA
ACTATTTTTGAACCACTTGCTCTGAGTCATAAGTCGAGGCACGTGATTCA
ACAACCATGATTCAAACCAAACATTGTAAATAGCTTCGTTCGATCTCATC
AATTTTGAAGGATTACTGGAAAGCATCATGTCGCCAACAGGACTTCTTTC
ATTATTACGTCCCAGAAGAAGGCGATTGGGTGTAATTAGATCGAGATTTT
CAACATTTGTCTTGCTTTGGACGCAGATTGGAAGATCATTTATGGAGAAT
TCGATGGCTTTGTCACGATGGAGTCTTGATTGTAGATCTTTGAAATCCAA
GGTCATGTTGGTGCAGCCTTTTATTAATTGACTTCCTCCATCGCAGTAGA
GTTTCTTTGGATACCCGCAATGACATGCAAACCGAGTGAACGAGAGGATG
AACGAGTCTGTCGAGTAGTCAGTCATCCATTACTTTTATTGAGGTTGCTG
ACGTGGTACAGCAACAGAAGATGACAAGCCATATCTTCACAGTGGTGCGT
TTGTGACTTGGAGAATACGATAAGTAAGGACCAGAAAGATCTACTTGTGA
CGCATAAAAGGCTGGGGCGACTGTTAGATTTGATTCTGATATCGGTCCCA
TCACGACTTCGACTGATTTCTTCATTAGAAAGCAACATCTCTGACAACTC
TTGCGAATTAGTTTGACCATAGAACGACANCATTAGAAAGCAACATCTCT
GACAACTCTTGCGAATTAGTTTGACCATAGAACGACATTCGATGATGTAT
ACCTTTTTTAACAAGTATCTGATGGTGGTTTCAACTCCTGTGTGTTGACA
AACTGGA Run BLAST on NCBI protein sequence of TCONS_00040666-protein >TCONS_00040666-protein ID=TCONS_00040666-protein|Name=TCONS_00040666-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MTDYSTDSFILSFTRFACHCGYPKKLYCDGGSQLIKGCTNMTLDFKDLQS
RLHRDKAIEFSINDLPICVQSKTNVENLDLITPNRLLLGRNNERSPVGDM
MLSSNPSKLMRSNEAIYNVWFESWLLNHVPRLMTQSKWFKNSYQFQIGDI
VLFKKKRHITIENVPVWHRIKG Run BLAST on NCBI transcript from alignment at sc0002514:12071..13177 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040666 ID=TCONS_00040666|Name=TCONS_00040666|organism=Clytia hemisphaerica|type=transcript|length=1107bp|location=Sequence derived from alignment at sc0002514:12071..13177 (Clytia hemisphaerica)
TCCAGTTTGTCAACACACAGGAGTTGAAACCACCATCAGATACTTGTTAA
AAAAGGTATACATCATCGAATGTCGTTCTATGGTCAAACTAATTCGCAAG
AGTTGTCAGAGATGTTGCTTTCTAATGNTGTCGTTCTATGGTCAAACTAA
TTCGCAAGAGTTGTCAGAGATGTTGCTTTCTAATGAAGAAATCAGTCGAA
GTCGTGATGGGACCGATATCAGAATCAAATCTAACAGTCGCCCCAGCCTT
TTATGCGTCACAAGTAGATCTTTCTGGTCCTTACTTATCGTATTCTCCAA
GTCACAAACGCACCACTGTGAAGATATGGCTTGTCATCTTCTGTTGCTGT
ACCACGTCAGCAACCTCAATAAAAGTAATGGATGACTGACTACTCGACAG
ACTCGTTCATCCTCTCGTTCACTCGGTTTGCATGTCATTGCGGGTATCCA
AAGAAACTCTACTGCGATGGAGGAAGTCAATTAATAAAAGGCTGCACCAA
CATGACCTTGGATTTCAAAGATCTACAATCAAGACTCCATCGTGACAAAG
CCATCGAATTCTCCATAAATGATCTTCCAATCTGCGTCCAAAGCAAGACA
AATGTTGAAAATCTCGATCTAATTACACCCAATCGCCTTCTTCTGGGACG
TAATAATGAAAGAAGTCCTGTTGGCGACATGATGCTTTCCAGTAATCCTT
CAAAATTGATGAGATCGAACGAAGCTATTTACAATGTTTGGTTTGAATCA
TGGTTGTTGAATCACGTGCCTCGACTTATGACTCAGAGCAAGTGGTTCAA
AAATAGTTATCAATTTCAGATTGGAGACATAgtccttttcaaaaaaaaac
gaCACATCACTATCGAAAACGTACCAGTTTGGCATCGTATCAAAGGTTGA
AATCGGTAAAGATAATGTTTGTCGAAAAGTCATGGTTCGTTATTGTAATT
CTACTGAGAGTACCCATCGTGAAACGTTTCGCTCTGTTCGAGAGTTGGTT
TTGATTCGTTCAGTTGACGAGTTCGATTTATTGGAAGAATTGGCCGAAAA
ATGTTAATGATTTGTTGGATCTGATTTGTTTGTTGCCCtaaacttttaat
gaaattt Coding sequence (CDS) from alignment at sc0002514:12071..13177 >TCONS_00040666 ID=TCONS_00040666|Name=TCONS_00040666|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0002514:12071..13177 (Clytia hemisphaerica)
ATGACTGACTACTCGACAGACTCGTTCATCCTCTCGTTCACTCGGTTTGC
ATGTCATTGCGGGTATCCAAAGAAACTCTACTGCGATGGAGGAAGTCAAT
TAATAAAAGGCTGCACCAACATGACCTTGGATTTCAAAGATCTACAATCA
AGACTCCATCGTGACAAAGCCATCGAATTCTCCATAAATGATCTTCCAAT
CTGCGTCCAAAGCAAGACAAATGTTGAAAATCTCGATCTAATTACACCCA
ATCGCCTTCTTCTGGGACGTAATAATGAAAGAAGTCCTGTTGGCGACATG
ATGCTTTCCAGTAATCCTTCAAAATTGATGAGATCGAACGAAGCTATTTA
CAATGTTTGGTTTGAATCATGGTTGTTGAATCACGTGCCTCGACTTATGA
CTCAGAGCAAGTGGTTCAAAAATAGTTATCAATTTCAGATTGGAGACATA
gtccttttcaaaaaaaaacgaCACATCACTATCGAAAACGTACCAGTTTG
GCATCGTATCAAAGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040666-exon-sc0002514-1491911889:12071..13177 | TCONS_00040666-exon-sc0002514-1491911889:12071..13177 | Clytia hemisphaerica | exon |
| TCONS_00040666-exon-sc0002514-1510915933:12071..13177 | TCONS_00040666-exon-sc0002514-1510915933:12071..13177 | Clytia hemisphaerica | exon |
| TCONS_00040666-exon-sc0002514-1575043694:12071..13177 | TCONS_00040666-exon-sc0002514-1575043694:12071..13177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002514 | supercontig | sc0002514:12071..13177 . |
Blast
The following BLAST results are available for this feature:
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