TCONS_00040662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040662
Unique NameTCONS_00040662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040662 ID=TCONS_00040662|Name=TCONS_00040662|organism=Clytia hemisphaerica|type=transcript|length=498bp
CTCCTTACCAGACCTGCAATTTGTCTTTTAGATTACACATTACTGTAAAC
GGTTGAAAATCTTCTAAAGCAGTCAAGTCCAAGGTGGTACCAAAAACTCA
TAATTCATTTAACCAATGCTATTGCTACATTATTGCGGTGCCATACTTTG
TCAAGtagaaaaaatgctttcaagaaTCAACATACTGTAATGTTAATAAA
ATATTGCCAACTGTCCAAAACAACATGGTTTCAATATCTGTTATTATAAC
CACAACCTTTACTCCAAAATCTGATAGAGTTTGGCATTGCATATTACATA
AAGATATGCCTCAAAGTTGAAAAAGGTAGCTGCCATGATGAACGTAGTAG
GTGCGTTAAACAAACGTAGTTATTTTCCATACAAAACTGATGGGGATACC
AATTTTTTCCATAAGTTTCATCAACATCTCCAAGTTTGAAAAAGGTGTCA
CACATGCTTATTATAATTTTAGACTTCAAGATTTTGTTTATTTAAGAT
Run BLAST on NCBI

transcript from alignment at sc0002511:27366..27863

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040662 ID=TCONS_00040662|Name=TCONS_00040662|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0002511:27366..27863 (Clytia hemisphaerica)
ATCTTAAATAAACAAAATCTTGAAGTCTAAAATTATAATAAGCATGTGTG
ACACCTTTTTCAAACTTGGAGATGTTGATGAAACTTATGGAAAAAATTGG
TATCCCCATCAGTTTTGTATGGAAAATAACTACGTTTGTTTAACGCACCT
ACTACGTTCATCATGGCAGCTACCTTTTTCAACTTTGAGGCATATCTTTA
TGTAATATGCAATGCCAAACTCTATCAGATTTTGGAGTAAAGGTTGTGGT
TATAATAACAGATATTGAAACCATGTTGTTTTGGACAGTTGGCAATATTT
TATTAACATTACAGTATGTTGAttcttgaaagcattttttctaCTTGACA
AAGTATGGCACCGCAATAATGTAGCAATAGCATTGGTTAAATGAATTATG
AGTTTTTGGTACCACCTTGGACTTGACTGCTTTAGAAGATTTTCAACCGT
TTACAGTAATGTGTAATCTAAAAGACAAATTGCAGGTCTGGTAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024771XLOC_024771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040662-exon-sc0002511-1491911889:27366..27863TCONS_00040662-exon-sc0002511-1491911889:27366..27863Clytia hemisphaericaexon
TCONS_00040662-exon-sc0002511-1510915933:27366..27863TCONS_00040662-exon-sc0002511-1510915933:27366..27863Clytia hemisphaericaexon
TCONS_00040662-exon-sc0002511-1575043694:27366..27863TCONS_00040662-exon-sc0002511-1575043694:27366..27863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002511supercontigsc0002511:27366..27863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.119711	0	0	0.993295	0.915734	2.52525	2.80737	0.103448	0.38441	0.621863	0.408789	0.734797	1.27182	1.25473	1.04729	0.368623	0.377827	0.521988	0.819334	2.25514	2.25785	0.563018	1.40763	0	0.11763	2.01995	1.07787	1.77131	1.52704
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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