TCONS_00040658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040658
Unique NameTCONS_00040658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040658 ID=TCONS_00040658|Name=TCONS_00040658|organism=Clytia hemisphaerica|type=transcript|length=1044bp
CCTAAATCAAAGAACAATAAAACATACCAGTATATTATATTGCTAATTCT
CAAAGGATTCTTTTTAATCATTTATACAATAAAATAGGCCTAGATAGCAT
TTGAATGTTTATCGTGggcatttgactttttgacttttaataaagaATGC
CTCACTGACTTTTCTTTGTGTCTCTGTGTAAAAGTTATTTCCCAAGATAT
TGAAATTCTCTAACTTAACATTATTGTGACCACGCTCTAAGGAATGTCTC
AAAacgtaacctgagatcagattgtgaatgttttctgcacaccacgctga
agctctaaagggatgtgtgaaaacaaacaatctgacgaatatgcaatttc
gaaatcgtaaggaccgcgttcgtctaaaaggactgggaatgacaacaaag
ttgcgcgattgtgtttatgaatagggcgccgtattagtttttatttttcc
ggcgcacaacaagattcttgttgtagaattttccgcgggaggactatttt
cctcagatgtataattttcaagtgcctttagaggtttaccgtgcgcgtaa
gaaaattatgaacatctgttatcaggttatcaAAACGTGGCTGTTTTTGT
CTCTTCCTCCGTAATCGTCGACCCGTTCCTGTAACCTTCTTCTAGCCTCA
CCAATGTAGGTCGCCGGACAATCAGGACACGTGACTTTGTAAACAAGATT
GTGCTTATGTTTTATTTCAGTTTTATCTCTAAGTTCTATCTTTTTTTTAA
CACTAAAAAACGAGCTTAGCTTTTTTGAATTAAAGCTTACATTAGCAGTC
ACTTTTTTTGTTGACGATTCTACTGACAGTCTTGTTGATATCCTTTGTAA
CCAGTTCACCTTGCTTACCAGCATAAGGGAGATAAATTTTAACGACGCTA
GTTGTTTGGGTCTCCCCATTAATGTTCAAGTCGTTAATAGGTTGTTCAGG
TTGTCGTTCTTTTTCGACATCGTTCCGGACTTTCTCGATGGTGCGTTTTA
TTAGGCTAACAGGGTAGCCATTAAGTAATATCATAAAAATTCAA
Run BLAST on NCBI

protein sequence of TCONS_00040658-protein

>TCONS_00040658-protein ID=TCONS_00040658-protein|Name=TCONS_00040658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MGRPKQLASLKFISLMLVSKVNWLQRISTRLSVESSTKKVTANVSFNSKK
LSSFFSVKKKIELRDKTEIKHKHNLVYKVTCPDCPATYIGEARRRLQERV
DDYGGRDKNSHVLIT
Run BLAST on NCBI

transcript from alignment at sc0002510:20717..21760

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040658 ID=TCONS_00040658|Name=TCONS_00040658|organism=Clytia hemisphaerica|type=transcript|length=1044bp|location=Sequence derived from alignment at sc0002510:20717..21760 (Clytia hemisphaerica)
TTGAATTTTTATGATATTACTTAATGGCTACCCTGTTAGCCTAATAAAAC
GCACCATCGAGAAAGTCCGGAACGATGTCGAAAAAGAACGACAACCTGAA
CAACCTATTAACGACTTGAACATTAATGGGGAGACCCAAACAACTAGCGT
CGTTAAAATTTATCTCCCTTATGCTGGTAAGCAAGGTGAACTGGTTACAA
AGGATATCAACAAGACTGTCAGTAGAATCGTCAACAAAAAAAGTGACTGC
TAATGTAAGCTTTAATTCAAAAAAGCTAAGCTCGTTTTTTAGTGTTAAAA
AAAAGATAGAACTTAGAGATAAAACTGAAATAAAACATAAGCACAATCTT
GTTTACAAAGTCACGTGTCCTGATTGTCCGGCGACCTACATTGGTGAGGC
TAGAAGAAGGTTACAGGAACGGGTCGACGATTACGGAGGAAGAGACAAAA
ACAGCCACGTTTtgataacctgataacagatgttcataattttcttacgc
gcacggtaaacctctaaaggcacttgaaaattatacatctgaggaaaata
gtcctcccgcggaaaattctacaacaagaatcttgttgtgcgccggaaaa
ataaaaactaatacggcgccctattcataaacacaatcgcgcaactttgt
tgtcattcccagtccttttagacgaacgcggtccttacgatttcgaaatt
gcatattcgtcagattgtttgttttcacacatccctttagagcttcagcg
tggtgtgcagaaaacattcacaatctgatctcaggttacgtTTTGAGACA
TTCCTTAGAGCGTGGTCACAATAATGTTAAGTTAGAGAATTTCAATATCT
TGGGAAATAACTTTTACACAGAGACACAAAGAAAAGTCAGTGAGGCATtc
tttattaaaagtcaaaaagtcaaatgccCACGATAAACATTCAAATGCTA
TCTAGGCCTATTTTATTGTATAAATGATTAAAAAGAATCCTTTGAGAATT
AGCAATATAATATACTGGTATGTTTTATTGTTCTTTGATTTAGG

Coding sequence (CDS) from alignment at sc0002510:20717..21760

>TCONS_00040658 ID=TCONS_00040658|Name=TCONS_00040658|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0002510:20717..21760 (Clytia hemisphaerica)
ATGGGGAGACCCAAACAACTAGCGTCGTTAAAATTTATCTCCCTTATGCT
GGTAAGCAAGGTGAACTGGTTACAAAGGATATCAACAAGACTGTCAGTAG
AATCGTCAACAAAAAAAGTGACTGCTAATGTAAGCTTTAATTCAAAAAAG
CTAAGCTCGTTTTTTAGTGTTAAAAAAAAGATAGAACTTAGAGATAAAAC
TGAAATAAAACATAAGCACAATCTTGTTTACAAAGTCACGTGTCCTGATT
GTCCGGCGACCTACATTGGTGAGGCTAGAAGAAGGTTACAGGAACGGGTC
GACGATTACGGAGGAAGAGACAAAAACAGCCACGTTTtgataacctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024767XLOC_024767Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040658-proteinTCONS_00040658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040658-exon-sc0002510-1491911889:20717..21760TCONS_00040658-exon-sc0002510-1491911889:20717..21760Clytia hemisphaericaexon
TCONS_00040658-exon-sc0002510-1510915933:20717..21760TCONS_00040658-exon-sc0002510-1510915933:20717..21760Clytia hemisphaericaexon
TCONS_00040658-exon-sc0002510-1575043694:20717..21760TCONS_00040658-exon-sc0002510-1575043694:20717..21760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002510supercontigsc0002510:20717..21760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39118	2.65467	5.27174	6.67286	9.60988	7.6545	7.27213	8.36873	4.90614	5.04968	4.57147	4.74712	5.74909	5.80738	4.12606	5.95324	4.63202	6.26664	6.28777	8.00595	11.0628	10.6998	4.32487	5.39696	3.83276	3.55811	10.6842	9.63676	5.63302	4.99139
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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