|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040657 ID=TCONS_00040657|Name=TCONS_00040657|organism=Clytia hemisphaerica|type=transcript|length=1335bp
catttacttttgactttgggattaaaaaagatatatacatataccaatca
gtgaatttgctgacagtcaaattacaatctgtctcctgtcttagacattc
agaTTGACATATTTTTCGGCTTACAGTTTGTTCGAAGCACGTTCAACTGC
CACAGCTGTGAGTAAGCAACTCCAGCTGGGATAAACACTGTCAAACCCAG
TTTGAGTAAGCAACTCAAGCTGATTGAAAGTAAATCAAAGTAAAATCAAA
GTAAAGGAATTACAAAACAAGGCCGGTCTGATATCACACTGagattgcaa
taaaaaaggggaaaaaaggCTTGATAAAGGCCGTTCCGTGAAAATTTGAA
GTAGCACTTGATGAAAATCTATTTgaattgaaaactttttacgGTCATGG
AACAGGAGGATTTATTAATTGACTTAGATACAGCATTGAGTGTTGCGCAT
TTCCAAAATTCATGTAGAACAACTCGCGGTCGTACATATTCTTGCGCTGT
TGATTGTTTTCTCGAAATAAGTTATCGCCTGCTTCTTCCTGAAATTAAAG
CGAAACTCGCATTTGAAGAATTAAGtgaattcttttatttgctttataTA
AGTGGTTCGATGGAAATTCCAATTGAAAATGATATCACTGTAGATGTCAA
AAGTAATGCGTTTAGACTGCTTGATGAAATTCGTGAACCAATATGgtcaa
aaattattgaaaattgtgGTACGTATGCTAGCAGGAATAGTGATGCACAG
TTTACAGAGCTTTTTTCGGATAACCTTTTCAAGACATTATCAGAAGGAGA
GAAAAGATTGTTTGAAACAAGATTTGATGTTCGAGGAACTTGCCCTGTTT
GTAATAACGAGAGACAAAGTAAGACAGGTATCATTGTTGCTCTTCTTACA
GACTTTTTATATCCAGAGATAACGATTGACCCAAACATCTGGCCAGATTG
TGTGAATAGAGCTCTTGAGCCAAGTGCAGAAGTTTATTGTAATATTTGTT
CTGTCAATATTCCTGCCGGGTATCAATCTGTTGACCTTCCATGTTATTTG
TTGATAGAATTTAGTTCTACAATTCACAACAGTTGTACATTTTTTGATCA
AATTACCGTGAAAGGAGATACTTATAGATTACAAGCCGTTGTTAGAAATC
TAGGTTTTCACTTTGCATGCGGTGTATTTATCGAGAACAAATGGATTTAC
ATTGATGATTTGAAccctgaaaaaataatttttgaaaatgttaatgcAAT
GTTTTCAGAAAATGATAAAGGAtggttttttgctttttataaaaaaactg
atgaagaaaCAGACTTTGTGGTGCACGATGCAACT Run BLAST on NCBI protein sequence of TCONS_00040657-protein >TCONS_00040657-protein ID=TCONS_00040657-protein|Name=TCONS_00040657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MEQEDLLIDLDTALSVAHFQNSCRTTRGRTYSCAVDCFLEISYRLLLPEI
KAKLAFEELSEFFYLLYISGSMEIPIENDITVDVKSNAFRLLDEIREPIW
SKIIENCGTYASRNSDAQFTELFSDNLFKTLSEGEKRLFETRFDVRGTCP
VCNNERQSKTGIIVALLTDFLYPEITIDPNIWPDCVNRALEPSAEVYCNI
CSVNIPAGYQSVDLPCYLLIEFSSTIHNSCTFFDQITVKGDTYRLQAVVR
NLGFHFACGVFIENKWIYIDDLNPEKIIFENVNAMFSENDKGWFFAFYKK
TDEETDFVVHDAT Run BLAST on NCBI transcript from alignment at sc0002510:18823..20157 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040657 ID=TCONS_00040657|Name=TCONS_00040657|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0002510:18823..20157 (Clytia hemisphaerica)
AGTTGCATCGTGCACCACAAAGTCTGtttcttcatcagtttttttataaa
aagcaaaaaaccaTCCTTTATCATTTTCTGAAAACATTgcattaacattt
tcaaaaattattttttcagggTTCAAATCATCAATGTAAATCCATTTGTT
CTCGATAAATACACCGCATGCAAAGTGAAAACCTAGATTTCTAACAACGG
CTTGTAATCTATAAGTATCTCCTTTCACGGTAATTTGATCAAAAAATGTA
CAACTGTTGTGAATTGTAGAACTAAATTCTATCAACAAATAACATGGAAG
GTCAACAGATTGATACCCGGCAGGAATATTGACAGAACAAATATTACAAT
AAACTTCTGCACTTGGCTCAAGAGCTCTATTCACACAATCTGGCCAGATG
TTTGGGTCAATCGTTATCTCTGGATATAAAAAGTCTGTAAGAAGAGCAAC
AATGATACCTGTCTTACTTTGTCTCTCGTTATTACAAACAGGGCAAGTTC
CTCGAACATCAAATCTTGTTTCAAACAATCTTTTCTCTCCTTCTGATAAT
GTCTTGAAAAGGTTATCCGAAAAAAGCTCTGTAAACTGTGCATCACTATT
CCTGCTAGCATACGTACcacaattttcaataatttttgacCATATTGGTT
CACGAATTTCATCAAGCAGTCTAAACGCATTACTTTTGACATCTACAGTG
ATATCATTTTCAATTGGAATTTCCATCGAACCACTTAtataaagcaaata
aaagaattcaCTTAATTCTTCAAATGCGAGTTTCGCTTTAATTTCAGGAA
GAAGCAGGCGATAACTTATTTCGAGAAAACAATCAACAGCGCAAGAATAT
GTACGACCGCGAGTTGTTCTACATGAATTTTGGAAATGCGCAACACTCAA
TGCTGTATCTAAGTCAATTAATAAATCCTCCTGTTCCATGACcgtaaaaa
gttttcaattcAAATAGATTTTCATCAAGTGCTACTTCAAATTTTCACGG
AACGGCCTTTATCAAGccttttttccccttttttattgcaatctCAGTGT
GATATCAGACCGGCCTTGTTTTGTAATTCCTTTACTTTGATTTTACTTTG
ATTTACTTTCAATCAGCTTGAGTTGCTTACTCAAACTGGGTTTGACAGTG
TTTATCCCAGCTGGAGTTGCTTACTCACAGCTGTGGCAGTTGAACGTGCT
TCGAACAAACTGTAAGCCGAAAAATATGTCAAtctgaatgtctaagacag
gagacagattgtaatttgactgtcagcaaattcactgattggtatatgta
tatatcttttttaatcccaaagtcaaaagtaaatg Coding sequence (CDS) from alignment at sc0002510:18823..20157 >TCONS_00040657 ID=TCONS_00040657|Name=TCONS_00040657|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0002510:18823..20157 (Clytia hemisphaerica)
AGTTGCATCGTGCACCACAAAGTCTGtttcttcatcagtttttttataaa
aagcaaaaaaccaTCCTTTATCATTTTCTGAAAACATTgcattaacattt
tcaaaaattattttttcagggTTCAAATCATCAATGTAAATCCATTTGTT
CTCGATAAATACACCGCATGCAAAGTGAAAACCTAGATTTCTAACAACGG
CTTGTAATCTATAAGTATCTCCTTTCACGGTAATTTGATCAAAAAATGTA
CAACTGTTGTGAATTGTAGAACTAAATTCTATCAACAAATAACATGGAAG
GTCAACAGATTGATACCCGGCAGGAATATTGACAGAACAAATATTACAAT
AAACTTCTGCACTTGGCTCAAGAGCTCTATTCACACAATCTGGCCAGATG
TTTGGGTCAATCGTTATCTCTGGATATAAAAAGTCTGTAAGAAGAGCAAC
AATGATACCTGTCTTACTTTGTCTCTCGTTATTACAAACAGGGCAAGTTC
CTCGAACATCAAATCTTGTTTCAAACAATCTTTTCTCTCCTTCTGATAAT
GTCTTGAAAAGGTTATCCGAAAAAAGCTCTGTAAACTGTGCATCACTATT
CCTGCTAGCATACGTACcacaattttcaataatttttgacCATATTGGTT
CACGAATTTCATCAAGCAGTCTAAACGCATTACTTTTGACATCTACAGTG
ATATCATTTTCAATTGGAATTTCCATCGAACCACTTAtataaagcaaata
aaagaattcaCTTAATTCTTCAAATGCGAGTTTCGCTTTAATTTCAGGAA
GAAGCAGGCGATAACTTATTTCGAGAAAACAATCAACAGCGCAAGAATAT
GTACGACCGCGAGTTGTTCTACATGAATTTTGGAAATGCGCAACACTCAA
TGCTGTATCTAAGTCAATTAATAAATCCTCCTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040657-exon-sc0002510-1491911889:18823..20157 | TCONS_00040657-exon-sc0002510-1491911889:18823..20157 | Clytia hemisphaerica | exon |
| TCONS_00040657-exon-sc0002510-1510915933:18823..20157 | TCONS_00040657-exon-sc0002510-1510915933:18823..20157 | Clytia hemisphaerica | exon |
| TCONS_00040657-exon-sc0002510-1575043694:18823..20157 | TCONS_00040657-exon-sc0002510-1575043694:18823..20157 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002510 | supercontig | sc0002510:18823..20157 . |
Blast
The following BLAST results are available for this feature:
|
