TCONS_00040656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040656
Unique NameTCONS_00040656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040656 ID=TCONS_00040656|Name=TCONS_00040656|organism=Clytia hemisphaerica|type=transcript|length=393bp
AATGATGATAACGATGAACGTGTTTTTGATGAAAACActgaaatgaaaag
tttcttACCATCTAAACTAAAGAAAGCAAAGGAAGCTGACTtaacaaaaa
gtgaaattttgaataCAAAAACTAAAATTGATATAGGAAGTACTCCACTT
AGTGAATTCAATACACCCTACTTAGCAAGTCTTGCATTTCCAACATTGTT
TCCAGACACAAAAGGTGACCCAACTAATCCTGCAATCATAAGGGAAATAG
CAAAAAGTGAAACAGAGagttttgctgaaaaattgaaacatttaatCAAA
TTTGCTGAAATTGATGACAAAGGAAAATGGTTTTATAGATTTGCATCTCA
TCCAAGATTTTCCTTTTGGGGCTTTAATATGCTGTATAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00040656-protein

>TCONS_00040656-protein ID=TCONS_00040656-protein|Name=TCONS_00040656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
NDDNDERVFDENTEMKSFLPSKLKKAKEADLTKSEILNTKTKIDIGSTPL
SEFNTPYLASLAFPTLFPDTKGDPTNPAIIREIAKSETESFAEKLKHLIK
FAEIDDKGKWFYRFASHPRFSFWGFNMLYRK
Run BLAST on NCBI

transcript from alignment at sc0002510:16920..17312

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040656 ID=TCONS_00040656|Name=TCONS_00040656|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0002510:16920..17312 (Clytia hemisphaerica)
TTTTCTATACAGCATATTAAAGCCCCAAAAGGAAAATCTTGGATGAGATG
CAAATCTATAAAACCATTTTCCTTTGTCATCAATTTCAGCAAATTTGatt
aaatgtttcaatttttcagcaaaactCTCTGTTTCACTTTTTGCTATTTC
CCTTATGATTGCAGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATG
TTGGAAATGCAAGACTTGCTAAGTAGGGTGTATTGAATTCACTAAGTGGA
GTACTTCCTATATCAATTTTAGTTTTTGtattcaaaatttcactttttgt
taAGTCAGCTTCCTTTGCTTTCTTTAGTTTAGATGGTaagaaacttttca
tttcagTGTTTTCATCAAAAACACGTTCATCGTTATCATCATT

Coding sequence (CDS) from alignment at sc0002510:16920..17312

>TCONS_00040656 ID=TCONS_00040656|Name=TCONS_00040656|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0002510:16920..17312 (Clytia hemisphaerica)
TTTTCTATACAGCATATTAAAGCCCCAAAAGGAAAATCTTGGATGAGATG
CAAATCTATAAAACCATTTTCCTTTGTCATCAATTTCAGCAAATTTGatt
aaatgtttcaatttttcagcaaaactCTCTGTTTCACTTTTTGCTATTTC
CCTTATGATTGCAGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAATG
TTGGAAATGCAAGACTTGCTAAGTAGGGTGTATTGAATTCACTAAGTGGA
GTACTTCCTATATCAATTTTAGTTTTTGtattcaaaatttcactttttgt
taAGTCAGCTTCCTTTGCTTTCTTTAGTTTAGATGGTaagaaacttttca
tttcagTGTTTTCATCAAAAACACGTTCATCGTTATCATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024765XLOC_024765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040656-exon-sc0002510-1491911889:16920..17312TCONS_00040656-exon-sc0002510-1491911889:16920..17312Clytia hemisphaericaexon
TCONS_00040656-exon-sc0002510-1510915933:16920..17312TCONS_00040656-exon-sc0002510-1510915933:16920..17312Clytia hemisphaericaexon
TCONS_00040656-exon-sc0002510-1575043694:16920..17312TCONS_00040656-exon-sc0002510-1575043694:16920..17312Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040656-proteinTCONS_00040656-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002510supercontigsc0002510:16920..17312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.85999	2.45723	1.97117	0.574338	5.12662	3.39329	1.38037	3.47845	1.37219	3.82138	4.41229	6.10848	1.57379	2.7002	2.36709	0.859179	0.569152	0.992392	0.319917	3.04171	3.29292	5.67476	0.258218	0.511839	2.6605	2.48727	0.0770573	1.89918	0	1.15049
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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