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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040653 ID=TCONS_00040653|Name=TCONS_00040653|organism=Clytia hemisphaerica|type=transcript|length=3396bp
GTTTAACTTATGTTGCATTATCACGTGTGAAAAAGCTAAGTGACATGGTA
ATTGAATCATTTCCATTCGAAAGAATCAATAAATTGAGTGAGGGTAAAAG
ATTTAAATTTAGAGTACGCGAAGAAAGCAGACTAGAAGAATTAGCAGCAC
GAAAGAAGCCTTAGaagtaaattaaagtgaaaCACTCATTCGAAGAAATA
AgtaaattcttttatttgcttatAAGTGGTTCCaattgaaaataatatca
tTGATGTCAAAAGTAATGTGTTTAGACTGCTGGATGAAATTCCAGACCAa
tatatggtcaaaaaattattaatattaGATAAAGTAGAAGTTGATATAGG
AAAGAAAGCTAACATGAATGTACTAACTGATGTTGCATTATCTCGTGTTA
AAAAGTGTGACATGGTTATTAAAACGTTTCCATTTGAAGGATAAACAGGC
TTagtgaaaacaaaaagtaaattaaagcaAGATTTTGAGCTATTTATTGT
TATCCAAAAATAGTAACTGTTACTGTtaaattctttgtattttatatttt
cagaaaaaataattaaaaatatcttcaaTCAATTGAAAAATCAAGAAAGT
TAAACAAGATATACGTaaatcttttcttatttttgataaaGCAAAAAGAT
TAAATAAGTTCCTTTATATACAGAAAACAACATGGAGACACCCAAGAAAA
AAACCAACATTGAGGAAAGTCCAAATTCTTCACCTCTTACTCCAACGAAA
ACAGACACCAAATCTCACCGTTACTTTTCATCGCCATCATCACGACATCA
TTCTCAACACCCTCAAAATACAGTGGTACAGacaCAAAATCTCAACGTTA
TTATTCATCTCCGTCGTCATCAAACTCAACACCATCGAAATACACTAATA
CAGACTTGATTGGATACATTATCCATGTTACGGAATCAATTACCAGTAAA
AGTGGTGGAACCTACTTCGACATATTTGTCAAAACGTCTCCATCAGACCA
GAAAACTGTCAGGGTCACCAAACGCGCCAACCCTGCGTTTAAGCAAAAAT
TCTTTATCGACAAAAAGGAGCTCCCTGTAAAATTTCACAATCTGGGGCAA
GGAGATAATGTGTTGTTCTTCAATAATTCTCGCGGATCCATGATTACGGA
AGAAAAGATAATCTCTTTTCACATTGATGACATTCATCTTAATGAAATTA
ATGACATTAAAGAAAAAGTACAAGGAATTGTCAATATCAAAGCTCTAATA
AAGTGGAACGGAATTGAGGagttgaaaacaaagaaaaacggTTCGAAGGA
GAGAATAAGAGAAGCAGTTTTAATTGACGAGCAGAAGAATAGTATTGCTG
TTTCCATCTGGGACAGCTAATCGATGCAATAGAAGAAAACAAAATCGTCC
AATTAACCAATCTTAACATCTACTACTTTTATGACGTTCAAAAACTTGCA
ACGACCTACATGACAAGAGCAAAAGTAATGGGTAATGCACATTTTAACGT
CAATATGGAAGAAATCGAAGTCgtaaattggaaaaagctggaagcagatg
aaaaggaaaaattacacCCCACGATCACAGGCTCTATTGTTGGATGCAAA
GTGGATATTTATCCCACCTGCATCTCTAGGAATTGTCGAAAGAGAGTTAC
AGTTCCTCCAGGCCAAGAAAAATTCTCGTGTAATCATTGTGGACAAAGAC
TTTTTTCCGCCAAATTGCACACTGGATTTGTGGCCACTGTCGACATCGAG
CCAGACGTCGAAAACGACGAAGATGATGATGAAATTGTGCAGTTGACTTG
TTTCAGCGAATCGCTAACTccgttttttggtaaaagctttttcaaaaact
tcaatGGTGAGAAACACAACCTTGAGGACAAAATTCTGGATCTGGGCAAT
GTTGTTGTAACTTATTCCCGTTCAAAGAAAGTAATCGAAGAACTAACAAA
AAACAACGACAAATGAATATACATTCACTATTCATTCACTTTTGGTGTCT
CAAGCAAAAACATTTATTTagtgtttttctcttttaacaAAAATTGTTCA
TTTATAACAAgacttttgaagaaaatttatatAGAGATATTCTTTTGATC
TTTAACCTAAGGCTAAATAAAATTTAATCTGTTGAAACGATGAATTGATA
ATAAtagcaaaaaaggaaaaacttttGCACCTTTTTTCGAGCATCgtttt
atttaccttttaggAATTtcattgttgttattttttgtttacatttttac
cTTACTAAAACTGACAgtactttgaaaattttcacttttgagagttttac
atttgaaaatattttttatttattttagttaAGAAAAAAGCTTATATTTA
TTGTCATATATTTTAAAAAACTCATAAATTGTAcgttttttgaggttttt
aCTTGTAAACATCTTTTGTTATTTACTCTCGGGTTACTTTTCaacctttt
taaaaatcatgCTCTTCTATGCTTAATTGTGAAGGAGTCgcaatttttgg
gaaaaaatcacCCACATAGCACCCACATATttataatgacccccccccat
tttataaaattttcctgaaaaaaatgcCAAAACATTCATTTTCCTAAGTT
TTTTGGAAGATTCATCCCAAAATAACTTAATAATgaccccccccatttta
tgatttttcttccAGGGTACCCatccccctgcttattccacgcCTACTAA
TAAGCGTAGAAGAGTACTCGCAAAACTTTATATTTGAAGGTTTTTACTTG
TAAAtatcttttgttatttatttgattttacaTAAAAGACAGAAAATGCT
TCATcatcaaattaatttttatgaaCATGAAATTGACATACTATTACTAG
CTTGTAAACAACTACATCTTTTACCAAAGAAACTGTCTTGAAATGACGAA
TTCCGAATGACTTATATGTACGTCCAAAATGAGCTCATATACCGAGTCCC
AGACTTGAGGCCATAGCTCCAGACTACGTGATTTAAAAGAACAttcataa
accgaatgcttttagaAAAGAATAAATATACCTTTCTATCTAACTCTCAC
TCAAAACTCAAAAgagttccaaaaaaaatttaaatttttgacattttcaa
aaaaatattgcgCCTTGTAAAGGTTAGAAAGCTTGATCAGTATTAAGTAC
GCCTTTATAAGCGTTTCTAGCGGGTGGCacttagtgaaagctatggctag
taataaagtcaaaataattgaaTGAAGTTTCCTTCTTACCAGGATTGTCA
GTTGCGGAGGCCAGGTCATCTACTTCTTTCAACAACATCAAgtctagacg
atgctatcgtccgtataatatgttattatgatataacatagtttgtatat
tataaaacgtaatatgtttcgcggcggatagagtctgtgtttacgg Run BLAST on NCBI protein sequence of TCONS_00040653-protein >TCONS_00040653-protein ID=TCONS_00040653-protein|Name=TCONS_00040653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MTRAKVMGNAHFNVNMEEIEVVNWKKLEADEKEKLHPTITGSIVGCKVDI
YPTCISRNCRKRVTVPPGQEKFSCNHCGQRLFSAKLHTGFVATVDIEPDV
ENDEDDDEIVQLTCFSESLTPFFGKSFFKNFNGEKHNLEDKILDLGNVVV
TYSRSKKVIEELTKNNDK Run BLAST on NCBI transcript from alignment at sc0002510:8835..13519- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040653 ID=TCONS_00040653|Name=TCONS_00040653|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at sc0002510:8835..13519- (Clytia hemisphaerica)
GTTTAACTTATGTTGCATTATCACGTGTGAAAAAGCTAAGTGACATGGTA
ATTGAATCATTTCCATTCGAAAGAATCAATAAATTGAGTGAGGGTAAAAG
ATTTAAATTTAGAGTACGCGAAGAAAGCAGACTAGAAGAATTAGCAGCAC
GAAAGAAGCCTTAGAAGTAAATTAAAGTGAAACACTCATTCGAAGAAATA
AGTAAATTCTTTTATTTGCTTATAAGTGGTTCCAATTGAAAATAATATCA
TTGATGTCAAAAGTAATGTGTTTAGACTGCTGGATGAAATTCCAGACCAA
TATATGGTCAAAAAATTATTAATATTAGATAAAGTAGAAGTTGATATAGG
AAAGAAAGCTAACATGAATGTACTAACTGATGTTGCATTATCTCGTGTTA
AAAAGTGTGACATGGTTATTAAAACGTTTCCATTTGAAGGATAAACAGGC
TTAGTGAAAACAAAAAGTAAATTAAAGCAAGATTTTGAGCTATTTATTGT
TATCCAAAAATAGTAACTGTTACTGTTAAATTCTTTGTATTTTATATTTT
CAGAAAAAATAATTAAAAATATCTTCAATCAATTGAAAAATCAAGAAAGT
TAAACAAGATATACGTAAATCTTTTCTTATTTTTGATAAAGCAAAAAGAT
TAAATAAGTTCCTTTATATACAGAAAACAACATGGAGACACCCAAGAAAA
AAACCAACATTGAGGAAAGTCCAAATTCTTCACCTCTTACTCCAACGAAA
ACAGGTAAGTAATTTTATTCACATGCTGGTGATGAAAATAATTCATTAGC
TTTCTTTGACTCTCAATAAAACTAAGAATGAATATTCAAGCATTTTATCA
AATTTTTTTAAATCTTCTTTATTTTGTTGTTTTCAAACAAAAGGAAATTT
TATAAAGTATTTCAAAAAGATATTGATTAAACTTTGTGACACGTCTTTGT
GACATATTTTTCTTTTATTTATCAGACACCAAATCTCACCGTTACTTTTC
ATCGCCATCATCACGACATCATTCTCAACACCCTCAAAATACAGTGGTAC
AGGTAATGTTACAATGTCAATGCTCTTTTCTTGATTTTCATTGATTAAAA
ATACTACAGTTTGTACCAGAAGCGTCAACATTCACTGTAAAACTATCGCA
TAATCAGCCAGTTGGATGGTGTATTTTAAACATTTGTTTTGTGTTGTACA
GTGTACTAAAACAAAGGTGATTGCCTGAATCAATAGCCCGGGGTCCACTT
AAAGCTTTTTTTATAGACTGGGTGGCGCGATTAAGTGGCCCGGTAATATA
TGGTAATATGCTTTTGCTTAGGCGGACTGTAAAACAGTCCGCCAGATTTT
AGTTGTTTTTGGAAGGTAAAAACGGTATGAAGCAATGTTTTTATTTGAGA
ATAAGAGATTGCAAATCTGTTACTGATGTTTGTTTCTCATTTTTGGTTAT
ATCTTTCAACTCCAAGTAGTTTTTTTGTTATTTGGATTTTAAACATTCTT
TTTCAAAATGGCGACCTCGCCAAACGCTCTTCACTGGACTCAGCGTCATA
AAAAAATTATCAAAAAGCAAAGTTCAGCCAAAAGTAGACTCTAGTCTACT
GAATCAATTGAATTGCAAAAAGGATAATGTTTTACAGAAAATTCCAGTTT
TTTTGAAAGTATGGTGCATATTCCACTATCAATTTTAGAGATGAGCTTTT
TCGATAAATCTTAAATTAACATGAACTCTTTTTTTTTTGCAGACACAAAA
TCTCAACGTTATTATTCATCTCCGTCGTCATCAAACTCAACACCATCGAA
ATACACTAATACAGGTAATCTTACAATGTGTGAATTTTTTCCATGAAACA
TCGAGTCAAGTTGCTTTACTCTAGGGTACCTAATAAACGTCCCCCGCTAA
TAAATTTTTCGAAATTTTCCAACCAGGACATTCTTATTCCAACCCCCCCC
CGCTTAATAAAGTTCCTTTTTTACCCTGATTCTTCTGTACACGCTTTTTG
TTTTATAAGAACAACTTATATAAGAATATCAGGGTGAGATTTCAGGTTTA
GAACAATAGGCCTATTGCTAAACATTAAACGATGTACTTCAATATTTACA
AACCAGCCGTTAGACCAATCAGATTGTTTAAAAACCTATGCAGGCTACTT
GACAATTATTTATATTCCATAAAGTTTCCATTTGAATTTTAGACTTGATT
GGATACATTATCCATGTTACGGAATCAATTACCAGTAAAAGTGGTGGAAC
CTACTTCGACATATTTGTCAAAACGTCTCCATCAGACCAGAAAACTGTCA
GGGTCACCAAACGCGCCAACCCTGCGTTTAAGCAAAAATTCTTTATCGAC
AAAAAGGAGCTCCCTGTAAAATTTCACAATCTGGGGCAAGGAGATAATGT
GTTGTTCTTCAATAATTCTCGCGGATCCATGATTACGGAAGAAAAGATAA
TCTCTTTTCACATTGATGACATTCATCTTAATGAAATTAATGACATTAAA
GAAAAAGTACAAGGAATTGTCAATATCAAAGCTCTAATAAAGTGGAACGG
AATTGAGGAGTTGAAAACAAAGAAAAACGGTTCGAAGGAGAGAATAAGAG
AAGCAGTTTTAATTGACGAGCAGAAGAATAGTATTGCTGTTTCCATCTGG
GACAGCTAATCGATGCAATAGAAGAAAACAAAATCGTCCAATTAACCAAT
CTTAACATCTACTACTTTTATGACGTTCAAAAACTTGCAACGACCTACAT
GACAAGAGCAAAAGTAATGGGTAATGCACATTTTAACGTCAATATGGAAG
AAATCGAAGTCGTAAATTGGAAAAAGCTGGAAGCAGATGAAAAGGAAAAA
TTACACCCCACGATCACAGGCTCTATTGTTGGATGCAAAGTGGATATTTA
TCCCACCTGCATCTCTAGGAATTGTCGAAAGAGAGTTACAGTTCCTCCAG
GCCAAGAAAAATTCTCGTGTAATCATTGTGGACAAAGACTTTTTTCCGCC
AAATTGCACACTGGATTTGTGGCCACTGTCGACATCGAGCCAGACGTCGA
AAACGACGAAGATGATGATGAAATTGTGCAGTTGACTTGTTTCAGCGAAT
CGCTAACTCCGTTTTTTGGTAAAAGCTTTTTCAAAAACTTCAATGGTGAG
AAACACAACCTTGAGGACAAAATTCTGGATCTGGGCAATGTTGTTGTAAC
TTATTCCCGTTCAAAGAAAGTAATCGAAGAACTAACAAAAAACAACGACA
AATGAATATACATTCACTATTCATTCACTTTTGGTGTCTCAAGCAAAAAC
ATTTATTTAGTGTTTTTCTCTTTTAACAAAAATTGTTCATTTATAACAAG
ACTTTTGAAGAAAATTTATATAGAGATATTCTTTTGATCTTTAACCTAAG
GCTAAATAAAATTTAATCTGTTGAAACGATGAATTGATAATAATAGCAAA
AAAGGAAAAACTTTTGCACCTTTTTTCGAGCATCGTTTTATTTACCTTTT
AGGAATTTCATTGTTGTTATTTTTTGTTTACATTTTTACCTTACTAAAAC
TGACAGTACTTTGAAAATTTTCACTTTTGAGAGTTTTACATTTGAAAATA
TTTTTTATTTATTTTAGTTAAGAAAAAAGCTTATATTTATTGTCATATAT
TTTAAAAAACTCATAAATTGTACGTTTTTTGAGGTTTTTACTTGTAAACA
TCTTTTGTTATTTACTCTCGGGTTACTTTTCAACCTTTTTAAAAATCATG
CTCTTCTATGCTTAATTGTGAAGGAGTCGCAATTTTTGGGAAAAAATCAC
CCACATAGCACCCACATATTTATAATGACCCCCCCCCATTTTATAAAATT
TTCCTGAAAAAAATGCCAAAACATTCATTTTCCTAAGTTTTTTGGAAGAT
TCATCCCAAAATAACTTAATAATGACCCCCCCCATTTTATGATTTTTCTT
CCAGGGTACCCATCCCCCTGCTTATTCCACGCCTACTAATAAGCGTAGAA
GAGTACTCGCAAAACTTTATATTTGAAGGTTTTTACTTGTAAATATCTTT
TGTTATTTATTTGATTTTACATAAAAGACAGAAAATGCTTCATCATCAAA
TTAATTTTTATGAACATGAAATTGACATACTATTACTAGCTTGTAAACAA
CTACATCTTTTACCAAAGAAACTGTCTTGAAATGACGAATTCCGAATGAC
TTATATGTACGTCCAAAATGAGCTCATATACCGAGTCCCAGACTTGAGGC
CATAGCTCCAGACTACGTGATTTAAAAGAACATTCATAAACCGAATGCTT
TTAGAAAAGAATAAATATACCTTTCTATCTAACTCTCACTCAAAACTCAA
AAGAGTTCCAAAAAAAATTTAAATTTTTGACATTTTCAAAAAAATATTGC
GCCTTGTAAAGGTTAGAAAGCTTGATCAGTATTAAGTACGCCTTTATAAG
CGTTTCTAGCGGGTGGCACTTAGTGAAAGCTATGGCTAGTAATAAAGTCA
AAATAATTGAATGAAGTTTCCTTCTTACCAGGATTGTCAGTTGCGGAGGC
CAGGTCATCTACTTCTTTCAACAACATCAAGTCTAGACGATGCTATCGTC
CGTATAATATGTTATTATGATATAACATAGTTTGTATATTATAAAACGTA
ATATGTTTCGCGGCGGATAGAGTCTGTGTTTACGG Coding sequence (CDS) from alignment at sc0002510:8835..13519- >TCONS_00040653 ID=TCONS_00040653|Name=TCONS_00040653|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0002510:8835..13519- (Clytia hemisphaerica)
ATGACAAGAGCAAAAGTAATGGGTAATGCACATTTTAACGTCAATATGGA
AGAAATCGAAGTCGTAAATTGGAAAAAGCTGGAAGCAGATGAAAAGGAAA
AATTACACCCCACGATCACAGGCTCTATTGTTGGATGCAAAGTGGATATT
TATCCCACCTGCATCTCTAGGAATTGTCGAAAGAGAGTTACAGTTCCTCC
AGGCCAAGAAAAATTCTCGTGTAATCATTGTGGACAAAGACTTTTTTCCG
CCAAATTGCACACTGGATTTGTGGCCACTGTCGACATCGAGCCAGACGTC
GAAAACGACGAAGATGATGATGAAATTGTGCAGTTGACTTGTTTCAGCGA
ATCGCTAACTCCGTTTTTTGGTAAAAGCTTTTTCAAAAACTTCAATGGTG
AGAAACACAACCTTGAGGACAAAATTCTGGATCTGGGCAATGTTGTTGTA
ACTTATTCCCGTTCAAAGAAAGTAATCGAAGAACTAACAAAAAACAACGA
CAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040653-exon-sc0002510-1575043694:12766..13519 | TCONS_00040653-exon-sc0002510-1575043694:12766..13519 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1575043694:12468..12544 | TCONS_00040653-exon-sc0002510-1575043694:12468..12544 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1575043694:11706..11777 | TCONS_00040653-exon-sc0002510-1575043694:11706..11777 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1575043694:8835..11327 | TCONS_00040653-exon-sc0002510-1575043694:8835..11327 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1510915933:12766..13519 | TCONS_00040653-exon-sc0002510-1510915933:12766..13519 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1510915933:12468..12544 | TCONS_00040653-exon-sc0002510-1510915933:12468..12544 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1510915933:11706..11777 | TCONS_00040653-exon-sc0002510-1510915933:11706..11777 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1510915933:8835..11327 | TCONS_00040653-exon-sc0002510-1510915933:8835..11327 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1491911889:12766..13519 | TCONS_00040653-exon-sc0002510-1491911889:12766..13519 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1491911889:12468..12544 | TCONS_00040653-exon-sc0002510-1491911889:12468..12544 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1491911889:11706..11777 | TCONS_00040653-exon-sc0002510-1491911889:11706..11777 | Clytia hemisphaerica | exon |
| TCONS_00040653-exon-sc0002510-1491911889:8835..11327 | TCONS_00040653-exon-sc0002510-1491911889:8835..11327 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002510 | supercontig | sc0002510:8835..13519 - |
Blast
The following BLAST results are available for this feature:
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