TCONS_00040651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040651
Unique NameTCONS_00040651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040651 ID=TCONS_00040651|Name=TCONS_00040651|organism=Clytia hemisphaerica|type=transcript|length=433bp
ctctgtttcagtacatctcttacatctgttaacccacttattaaagctat
ctagctaagctctattggctgaccttccagcctcggctggtttattatat
ttatttttaacctttttgcAGCGCCCGTTAATGTTTTATTGAGAAGTCGT
TTTACATTTGTAAAGAAAATCCCAACCATAATATTAATAAGTTAAAAGAT
TATTAAAAAATGAACAGGAGAACATGAAGAATTTCTCGACTGGTTTGAAA
TTCACgagttgataatttttgaagaattttttaaaatctaaGTATAGTAA
TTTCTCAAATCGAAAGTTAAAGCCCTTAAACTCTAACCCTGCTTTAAAGG
CGACCTATATGAAAAGTATCAACTCGTGATTTATCCTTTTTAGAAAAGTC
TACAGTTTTTCCCATTTCATTGCTCAATTCCAT
Run BLAST on NCBI

transcript from alignment at sc0002509:7774..8206

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040651 ID=TCONS_00040651|Name=TCONS_00040651|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0002509:7774..8206 (Clytia hemisphaerica)
ATGGAATTGAGCAATGAAATGGGAAAAACTGTAGACTTTTCTAAAAAGGA
TAAATCACGAGTTGATACTTTTCATATAGGTCGCCTTTAAAGCAGGGTTA
GAGTTTAAGGGCTTTAACTTTCGATTTGAGAAATTACTATACttagattt
taaaaaattcttcaaaaattatcaactcGTGAATTTCAAACCAGTCGAGA
AATTCTTCATGTTCTCCTGTTCATTTTTTAATAATCTTTTAACTTATTAA
TATTATGGTTGGGATTTTCTTTACAAATGTAAAACGACTTCTCAATAAAA
CATTAACGGGCGCTgcaaaaaggttaaaaataaatataataaaccagccg
aggctggaaggtcagccaatagagcttagctagatagctttaataagtgg
gttaacagatgtaagagatgtactgaaacagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024760XLOC_024760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040651-exon-sc0002509-1491911889:7774..8206TCONS_00040651-exon-sc0002509-1491911889:7774..8206Clytia hemisphaericaexon
TCONS_00040651-exon-sc0002509-1510915933:7774..8206TCONS_00040651-exon-sc0002509-1510915933:7774..8206Clytia hemisphaericaexon
TCONS_00040651-exon-sc0002509-1575043694:7774..8206TCONS_00040651-exon-sc0002509-1575043694:7774..8206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002509supercontigsc0002509:7774..8206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.21828	0	0	1.57089	0	0.252481	0.91133	1.15586	0.486277	0	0.408809	0.536816	0.175361	0.28737	0	0.292843	0	1.14358	1.13475	1.45694	1.67154	0	0.217114	0.58472	0	0.742121	0	0.333554	0.704492
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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