|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040649 ID=TCONS_00040649|Name=TCONS_00040649|organism=Clytia hemisphaerica|type=transcript|length=1396bp
CTTCTGTAGGTCAAATGCTGCTACCAATAGAGATGGGTCATCTTTTGCTT
GTTCTTTTAGACTGTTTTTCAATGCTCGAACAGTATCTTTTTCTTTAAGA
TGGCTTTTTTGGTCAGCACGGATTTGCTCTGCCTTTAAGCTGttgtcaag
atttttgaaaGTCTCACAAGTGTCACACCTGTCCTTTTTGACAAGTTGGA
ATTTCAGGTTGAAACATTCATGAAAGACTCTGTGATAAAATGGGTAACTT
TCTTGTGGATACCCTTTTTTAATACGCCAGTTATTGTACATGCGGTGCAT
TTCTGCTACTGTTAGCTCGGAGGGGAGATACTCGTATTTAGAATCTTTCC
TTACATAATGAGATTCAACGACGAAGAATTGCTTAATGTGTTCTTTGACG
TACTCTTCACGTTGCTCACATTTCTTGTGGTTGTCATGTCTCCCTCTACC
ATCTTCGGCTGGGGTTCCTGTTGCAGTCTTCTTTCTCAAAGCAGATTTAA
CCCTCTTGTCATTTATTGCTAAAGTATTGAGAAACATTACAGAGCAGCAT
TTCCGTTTTTCACCATCAATGAATAAGGAGTGTGTTCTTGTCAAGTCTCT
GGTTCTGCTCTTCTTTGTTTTATCCTTAGTTTTGCGTTCACGGCTTTTCT
TCTCTTCTTTAACTAACATTGCTATTTGTTGTGTTTGGATTTTCTTATCG
CCACTAGCGTAGAAGTCATTGAAAATCTGAATTCGCTTTTCCTCTGTAAA
GGTATCACTGCATTTAAGACGACAGTTGCATGGTGGTTTCATCTCTCTTT
TTTTGATCATCTTTGAAGTCTTTTTCCCAGAAACTTTAGTCTCATAATGA
AGTTCCTTTCCAGAATTTACagccttcttctttttgttcaccaaccagtt
ttctggctgtcttttcctttttctctgTGCAAGAGGTGTCGGTGTTTTGG
CTTCAGTACCAGATTCcaattgattttttgcagagaTAATCTTGATATCA
GATTTTTCCCATAAAATAGCAGCTCCTTCACACATGGTATCAAGATCAAA
GGAGTCCCATTCCATTGCTTTCTTCATTACTTTGACAATGAAAAAGCGCC
CCTGATTATCTTTGATCTCTTCACCGTGGACCAAAGTACCATCAACAGTC
ATTTCGTAACGtgctttgaaaatttcttttccttcttttaaCAGGTAAAC
CTCTTCACCATCAACAAGAGAATTTTCAGAGTTTCCATCATCCTCAGATG
AGGATTCATCTGACAGTGATTTGAAGTTAGGAACATGTCGACTAAACTTT
CTCTTTGAAACTGTTGGTAGTCCTAGTTTCTTGAGCACATCATTATGTTC
AGCTATATTTTTCTGTTGTAGAAGTTCGATTGAGCTAATATCCTGC Run BLAST on NCBI protein sequence of TCONS_00040649-protein >TCONS_00040649-protein ID=TCONS_00040649-protein|Name=TCONS_00040649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
QDISSIELLQQKNIAEHNDVLKKLGLPTVSKRKFSRHVPNFKSLSDESSS
EDDGNSENSLVDGEEVYLLKEGKEIFKARYEMTVDGTLVHGEEIKDNQGR
FFIVKVMKKAMEWDSFDLDTMCEGAAILWEKSDIKIISAKNQLESGTEAK
TPTPLAQRKRKRQPENWLVNKKKKAVNSGKELHYETKVSGKKTSKMIKKR
EMKPPCNCRLKCSDTFTEEKRIQIFNDFYASGDKKIQTQQIAMLVKEEKK
SRERKTKDKTKKSRTRDLTRTHSLFIDGEKRKCCSVMFLNTLAINDKRVK
SALRKKTATGTPAEDGRGRHDNHKKCEQREEYVKEHIKQFFVVESHYVRK
DSKYEYLPSELTVAEMHRMYNNWRIKKGYPQESYPFYHRVFHECFNLKFQ
LVKKDRCDTCETFKNLDNSLKAEQIRADQKSHLKEKDTVRALKNSLKEQA
KDDPSLLVAAFDLQK Run BLAST on NCBI transcript from alignment at sc0002508:20549..21944 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040649 ID=TCONS_00040649|Name=TCONS_00040649|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at sc0002508:20549..21944 (Clytia hemisphaerica)
GCAGGATATTAGCTCAATCGAACTTCTACAACAGAAAAATATAGCTGAAC
ATAATGATGTGCTCAAGAAACTAGGACTACCAACAGTTTCAAAGAGAAAG
TTTAGTCGACATGTTCCTAACTTCAAATCACTGTCAGATGAATCCTCATC
TGAGGATGATGGAAACTCTGAAAATTCTCTTGTTGATGGTGAAGAGGTTT
ACCTGttaaaagaaggaaaagaaattttcaaagcaCGTTACGAAATGACT
GTTGATGGTACTTTGGTCCACGGTGAAGAGATCAAAGATAATCAGGGGCG
CTTTTTCATTGTCAAAGTAATGAAGAAAGCAATGGAATGGGACTCCTTTG
ATCTTGATACCATGTGTGAAGGAGCTGCTATTTTATGGGAAAAATCTGAT
ATCAAGATTAtctctgcaaaaaatcaattgGAATCTGGTACTGAAGCCAA
AACACCGACACCTCTTGCAcagagaaaaaggaaaagacagccagaaaact
ggttggtgaacaaaaagaagaaggctGTAAATTCTGGAAAGGAACTTCAT
TATGAGACTAAAGTTTCTGGGAAAAAGACTTCAAAGATGATCAAAAAAAG
AGAGATGAAACCACCATGCAACTGTCGTCTTAAATGCAGTGATACCTTTA
CAGAGGAAAAGCGAATTCAGATTTTCAATGACTTCTACGCTAGTGGCGAT
AAGAAAATCCAAACACAACAAATAGCAATGTTAGTTAAAGAAGAGAAGAA
AAGCCGTGAACGCAAAACTAAGGATAAAACAAAGAAGAGCAGAACCAGAG
ACTTGACAAGAACACACTCCTTATTCATTGATGGTGAAAAACGGAAATGC
TGCTCTGTAATGTTTCTCAATACTTTAGCAATAAATGACAAGAGGGTTAA
ATCTGCTTTGAGAAAGAAGACTGCAACAGGAACCCCAGCCGAAGATGGTA
GAGGGAGACATGACAACCACAAGAAATGTGAGCAACGTGAAGAGTACGTC
AAAGAACACATTAAGCAATTCTTCGTCGTTGAATCTCATTATGTAAGGAA
AGATTCTAAATACGAGTATCTCCCCTCCGAGCTAACAGTAGCAGAAATGC
ACCGCATGTACAATAACTGGCGTATTAAAAAAGGGTATCCACAAGAAAGT
TACCCATTTTATCACAGAGTCTTTCATGAATGTTTCAACCTGAAATTCCA
ACTTGTCAAAAAGGACAGGTGTGACACTTGTGAGACtttcaaaaatcttg
acaaCAGCTTAAAGGCAGAGCAAATCCGTGCTGACCAAAAAAGCCATCTT
AAAGAAAAAGATACTGTTCGAGCATTGAAAAACAGTCTAAAAGAACAAGC
AAAAGATGACCCATCTCTATTGGTAGCAGCATTTGACCTACAGAAG Coding sequence (CDS) from alignment at sc0002508:20549..21944 >TCONS_00040649 ID=TCONS_00040649|Name=TCONS_00040649|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0002508:20549..21944 (Clytia hemisphaerica)
CAGGATATTAGCTCAATCGAACTTCTACAACAGAAAAATATAGCTGAACA
TAATGATGTGCTCAAGAAACTAGGACTACCAACAGTTTCAAAGAGAAAGT
TTAGTCGACATGTTCCTAACTTCAAATCACTGTCAGATGAATCCTCATCT
GAGGATGATGGAAACTCTGAAAATTCTCTTGTTGATGGTGAAGAGGTTTA
CCTGttaaaagaaggaaaagaaattttcaaagcaCGTTACGAAATGACTG
TTGATGGTACTTTGGTCCACGGTGAAGAGATCAAAGATAATCAGGGGCGC
TTTTTCATTGTCAAAGTAATGAAGAAAGCAATGGAATGGGACTCCTTTGA
TCTTGATACCATGTGTGAAGGAGCTGCTATTTTATGGGAAAAATCTGATA
TCAAGATTAtctctgcaaaaaatcaattgGAATCTGGTACTGAAGCCAAA
ACACCGACACCTCTTGCAcagagaaaaaggaaaagacagccagaaaactg
gttggtgaacaaaaagaagaaggctGTAAATTCTGGAAAGGAACTTCATT
ATGAGACTAAAGTTTCTGGGAAAAAGACTTCAAAGATGATCAAAAAAAGA
GAGATGAAACCACCATGCAACTGTCGTCTTAAATGCAGTGATACCTTTAC
AGAGGAAAAGCGAATTCAGATTTTCAATGACTTCTACGCTAGTGGCGATA
AGAAAATCCAAACACAACAAATAGCAATGTTAGTTAAAGAAGAGAAGAAA
AGCCGTGAACGCAAAACTAAGGATAAAACAAAGAAGAGCAGAACCAGAGA
CTTGACAAGAACACACTCCTTATTCATTGATGGTGAAAAACGGAAATGCT
GCTCTGTAATGTTTCTCAATACTTTAGCAATAAATGACAAGAGGGTTAAA
TCTGCTTTGAGAAAGAAGACTGCAACAGGAACCCCAGCCGAAGATGGTAG
AGGGAGACATGACAACCACAAGAAATGTGAGCAACGTGAAGAGTACGTCA
AAGAACACATTAAGCAATTCTTCGTCGTTGAATCTCATTATGTAAGGAAA
GATTCTAAATACGAGTATCTCCCCTCCGAGCTAACAGTAGCAGAAATGCA
CCGCATGTACAATAACTGGCGTATTAAAAAAGGGTATCCACAAGAAAGTT
ACCCATTTTATCACAGAGTCTTTCATGAATGTTTCAACCTGAAATTCCAA
CTTGTCAAAAAGGACAGGTGTGACACTTGTGAGACtttcaaaaatcttga
caaCAGCTTAAAGGCAGAGCAAATCCGTGCTGACCAAAAAAGCCATCTTA
AAGAAAAAGATACTGTTCGAGCATTGAAAAACAGTCTAAAAGAACAAGCA
AAAGATGACCCATCTCTATTGGTAGCAGCATTTGACCTACAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040649-exon-sc0002508-1491911889:20549..21944 | TCONS_00040649-exon-sc0002508-1491911889:20549..21944 | Clytia hemisphaerica | exon |
| TCONS_00040649-exon-sc0002508-1510915933:20549..21944 | TCONS_00040649-exon-sc0002508-1510915933:20549..21944 | Clytia hemisphaerica | exon |
| TCONS_00040649-exon-sc0002508-1575043694:20549..21944 | TCONS_00040649-exon-sc0002508-1575043694:20549..21944 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002508 | supercontig | sc0002508:20549..21944 . |
Blast
The following BLAST results are available for this feature:
|
