TCONS_00040645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040645
Unique NameTCONS_00040645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040645 ID=TCONS_00040645|Name=TCONS_00040645|organism=Clytia hemisphaerica|type=transcript|length=330bp
TGGTCGGAATTTACAACAAGAATGATCATTGGAATCTACTAattattttt
ccaaaaaaaacgcAACTCTGGCTGGCTAATCCTCTCGGTGAAGGAACAAC
TGTAATGCAGAATGTCCTTAAGACATGGCAGTAGGTTTCGTTTGTTTCCC
TTGCAAGGGCTgtgtttctaggctatatttggCTTTCTGCTGTAGAATAT
CTTCTATTTGACATTAGCTCCAGTATCATAAATAGCGGTCCCAGacaggg
ggggggcacgcagttactacaagacagtatgacacttactaccgtggtgg
tactgtattcaaaagttatgaaaacagtta
Run BLAST on NCBI

transcript from alignment at sc0002507:21310..21856+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040645 ID=TCONS_00040645|Name=TCONS_00040645|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0002507:21310..21856+ (Clytia hemisphaerica)
TGGTCGGAATTTACAACAAGAATGATCATTGGAATCTACTAGTAAGAATC
TGCATTTTGATCATTTTCCCTGTATTCCATTATTGCTCTTCCGGTTTTCC
ACGCCCTAGTAATATTCGAAATACCTCAGGGTAAAATACTTCTCAATTTT
CAACAGCTTTCTTTACTGCTAAGAATTGTGTATTTTTACCTAGGTGGTAA
AATGAATACGATGCTTGAATCCCGAACTTGACGAGCGACTGTTCTTTTAT
ATTTGTagattatttttccaaaaaaaacgcAACTCTGGCTGGCTAATCCT
CTCGGTGAAGGAACAACTGTAATGCAGAATGTCCTTAAGACATGGCAGTA
GGTTTCGTTTGTTTCCCTTGCAAGGGCTgtgtttctaggctatatttggC
TTTCTGCTGTAGAATATCTTCTATTTGACATTAGCTCCAGTATCATAAAT
AGCGGTCCCAGacagggggggggcacgcagttactacaagacagtatgac
acttactaccgtggtggtactgtattcaaaagttatgaaaacagtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024754XLOC_024754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040645-exon-sc0002507-1491911889:21310..21350TCONS_00040645-exon-sc0002507-1491911889:21310..21350Clytia hemisphaericaexon
TCONS_00040645-exon-sc0002507-1510915933:21310..21350TCONS_00040645-exon-sc0002507-1510915933:21310..21350Clytia hemisphaericaexon
TCONS_00040645-exon-sc0002507-1575043694:21310..21350TCONS_00040645-exon-sc0002507-1575043694:21310..21350Clytia hemisphaericaexon
TCONS_00040645-exon-sc0002507-1491911889:21568..21856TCONS_00040645-exon-sc0002507-1491911889:21568..21856Clytia hemisphaericaexon
TCONS_00040645-exon-sc0002507-1510915933:21568..21856TCONS_00040645-exon-sc0002507-1510915933:21568..21856Clytia hemisphaericaexon
TCONS_00040645-exon-sc0002507-1575043694:21568..21856TCONS_00040645-exon-sc0002507-1575043694:21568..21856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002507supercontigsc0002507:21310..21856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23902	1.98007	2.07238	2.36565	0.516514	0	0.477674	1.82703	0	0.394833	0.425109	0.889805	0.286639	0.244845	0.385494	0	0	0.289595	0	0.498178	1.27427	1.86467	2.54967	1.70246	0.344946	1.68365	15.2243	11.6481	1.05069	2.19796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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