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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040644 ID=TCONS_00040644|Name=TCONS_00040644|organism=Clytia hemisphaerica|type=transcript|length=890bp
aatgatttgAAATGTCCTGTAAATTTGAAGTTGGAGAAAGATTTTCTTCA
TTTGAAGAGCttgaaagaaagttaaaaatatataaagaagAGAATGCAAC
CGAGCTGTATAAAGTTAACACTAGATCGTTGGAAAATGCtgttaaaagaa
aatctattacaacagacaaaaatattaactcAGATCTACGTTATTATGAA
CTAAATTATCGCTGTGTTGAGGGTGGAAAATGTTCATCAAGAAGCACAGG
CAAAAGAAAGACTAAAACATTCAAGAAGGAATGCCCGTTTATCATAAAGT
TTGGTGCTGATGAAGATGCTCAGACACTGGTTGTGAAATCAATTAAAGAT
GAGCACAATCATCAGCTTGATAAAAACCTGTTCCGACATTATACCAGCCA
GAGAAAAGTGCCTAAGGATGTCAAAAAGAAAGCTGCTGACCGGCTTAAAG
CCAAAGCAAACAAAAAGATCGTGAGGCTTCAGATGTCTAGGGAATCTGGA
AAAGTTGTGACAATGCGAGATGTTCACAACTTGGCCTACCAGACAAAGAA
AGAACACCAGAATAGTAGAAATGATCTGGAAGaagttataaaaattttaa
aagaagagTTTGGTAAGTGGACATAAATTGTATGCACCTTGTAGTATATA
AAGCCTAAACAATATGACTCATCAAATTAATAAGAGTGACAGATCCAGAG
AGGTGGTTCATAATGTTTTTTCCAAGTTCCCTGGCGTAAGGAAGTTTTGG
TAGATTTTGCCAAATCAATTTCCTGGAAATATTTCTTTAACCCGCTTTGC
AAAATTAAATGCCAGCTTGATTTAATTAAGCCTTCTCATGAAATATTTTG
TACGATTTTTCACTAATTTAGTGTTTTTAACATAGTGGCA Run BLAST on NCBI protein sequence of TCONS_00040644-protein >TCONS_00040644-protein ID=TCONS_00040644-protein|Name=TCONS_00040644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MSCKFEVGERFSSFEELERKLKIYKEENATELYKVNTRSLENAVKRKSIT
TDKNINSDLRYYELNYRCVEGGKCSSRSTGKRKTKTFKKECPFIIKFGAD
EDAQTLVVKSIKDEHNHQLDKNLFRHYTSQRKVPKDVKKKAADRLKAKAN
KKIVRLQMSRESGKVVTMRDVHNLAYQTKKEHQNSRNDLEEVIKILKEEF
GKWT Run BLAST on NCBI transcript from alignment at sc0002507:17681..19674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040644 ID=TCONS_00040644|Name=TCONS_00040644|organism=Clytia hemisphaerica|type=transcript|length=1994bp|location=Sequence derived from alignment at sc0002507:17681..19674+ (Clytia hemisphaerica)
aatgatttgAAATGTCCTGTAAATTTGAAGTTGGAGAAAGATTTTCTTCA
TTTGAAGAGCttgaaagaaagttaaaaatatataaagaagAGAATGCAAC
CGAGCTGTATAAAGTTAACACTAGATCGTTGGAAAATGCtgttaaaagaa
aatctattacaacagacaaaaatattaactcAGATCTACGTTATTATGAA
CTAAATTATCGCTGTGTTGAGGGTGGAAAATGTTCATCAAGAAGCACAGG
CAAAAGAAAGACTAAGTAAgtgtaaagattttttttgaaatggaaaactt
ttattgatttgaaatatttgcaaataataataataaaacaattattACAT
TCCTCCTTAAAACTAATACAAGGTAAAACAACAAAGGCATAGACCTGAAA
AGTCCCCCTCTAGAaaaactactctcgggtacctaatagccgggggggtt
ggaataagcaggggggttggaaaatatctcaaaatttaataagcgggggg
gggggttggaataaaaatatcctgggtggaaaatgtttgaaaaggaggct
aatacagcagaatcaagacaaaaaagagaactttcaaaaacattttccca
aaaattaataagcaggggtttggaataagaatgtccgggtggaaaatttt
tgaaaaattaattagcggggggacggctattaggtacctgagagtagtTA
GCTTTCTATTTTAAGGGATTGTGATTGTACAATTGTGACAGGACTAACTT
AACTTATCATTTCAAAATGGGGAcgccaaaaaaatatttttggagacTTT
GGTTCCCAATGGAGGCTTGATGATGATGTTTTGACTGTTTTTGACAATTG
TGTGTGCTATATTCTTACTTTGTCTATAGCCTtttcttatttcaaatttc
atgAAAGAACATTCAAGAAGGAATGCCCGTTTATCATAAAGTTTGGTGCT
GATGAAGATGCTCAGACACTGGTTGTGAAATCAATTAAAGATGAGCACAA
TCATCAGCTTGATAAAgtaagatttttacaaaatttttgaacgttTTGAA
CTAGTAAGCTAACGATCAGCTTGTGAACATGATACAAGAagtataaaatt
tgaaaaatagaaattggaaaaaaaatggaaaaaataaaattgatttcaag
cagttttttcattttgattgttgtCGATGACTATTTATACTTGGGTTAAC
TTCTCAATTTTTATTCACCGATTCCTTAATTTTATGtcttccattttttt
tttgtatttttgactaGATAGTGAATTTTGTTGCTTATCTACGAACTTTA
ATGATTGAATTCTacctttctttattttttttgctgtcTGACCGGCCCCA
CTCTTTTGAGAACCTTGGCCCGtgaaacaacaaattaatttggcTTCACC
TATGTATATATTTTAACtggaaatgaaacatttttgaatAGATTTACTCT
TAATTTATTCTTAATCTGTTTAATCAAGAACCTGTTCCGACATTATACCA
GCCAGAGAAAAGTGCCTAAGGATGTCAAAAAGAAAGCTGCTGACCGGCTT
AAAGCCAAAGCAAACAAAAAGATCGTGAGGCTTCAGATGTCTAGGGAATC
TGGAAAAGTTGTGACAATGCGAGATGTTCACAACTTGGCCTACCAGACAA
AGAAAGAACACCAGAATAGTAGAAATGATCTGGAAGaagttataaaaatt
ttaaaagaagagTTTGGTAAGTGGACATAAATTGTATGCACCTTGTAGTA
TATAAAGCCTAAACAATATGACTCATCAAATTAATAAGAGTGACAGATCC
AGAGAGGTGGTTCATAATGTTTTTTCCAAGTTCCCTGGCGTAAGGAAGTT
TTGGTAGATTTTGCCAAATCAATTTCCTGGAAATATTTCTTTAACCCGCT
TTGCAAAATTAAATGCCAGCTTGATTTAATTAAGCCTTCTCATGAAATAT
TTTGTACGATTTTTCACTAATTTAGTGTTTTTAACATAGTGGCA Coding sequence (CDS) from alignment at sc0002507:17681..19674+ >TCONS_00040644 ID=TCONS_00040644|Name=TCONS_00040644|organism=Clytia hemisphaerica|type=CDS|length=1845bp|location=Sequence derived from alignment at sc0002507:17681..19674+ (Clytia hemisphaerica)
ATGTCCTGTAAATTTGAAGTTGGAGAAAGATTTTCTTCATTTGAAGAGCt
tgaaagaaagttaaaaatatataaagaagAGAATGCAACCGAGCTGTATA
AAGTTAACACTAGATCGTTGGAAAATGCtgttaaaagaaaatctattaca
acagacaaaaatattaactcAGATCTACGTTATTATGAACTAAATTATCG
CTGTGTTGAGGGTGGAAAATGTTCATCAAGAAGCACAGGCAAAAGAAAGA
CTAAAACATTCAAGAAGGAATGCCCGTTTATCATAAAGTTTGGTGCTGAT
GAAGATGCTCAGACACTGGTTGTGAAATCAATTAAAGATGAGCACAATCA
TCAGCTTGATAAAAACCTGTTCCGACATTATACCAGCCAGAGAAAAGTGC
CTAAGGATGTCAAAAAGAAAGCTGCTGACCGGCTTAAAGCCAAAGCAAAC
AAAAAGATCGTGAGGCTTCAGATGTCTAGGGAATCTGGAAAAGTTGTGAC
AATGCGAGATGTTCACAACTTGGCCTACCAGACAAAGAAAGAACACCAGA
ATAGTAGAAATGATCTGGAAGaagttataaaaattttaaaagaagagTTT
GGTAAGTGGACATAAATGTCCTGTAAATTTGAAGTTGGAGAAAGATTTTC
TTCATTTGAAGAGCttgaaagaaagttaaaaatatataaagaagAGAATG
CAACCGAGCTGTATAAAGTTAACACTAGATCGTTGGAAAATGCtgttaaa
agaaaatctattacaacagacaaaaatattaactcAGATCTACGTTATTA
TGAACTAAATTATCGCTGTGTTGAGGGTGGAAAATGTTCATCAAGAAGCA
CAGGCAAAAGAAAGACTAAAACATTCAAGAAGGAATGCCCGTTTATCATA
AAGTTTGGTGCTGATGAAGATGCTCAGACACTGGTTGTGAAATCAATTAA
AGATGAGCACAATCATCAGCTTGATAAAAACCTGTTCCGACATTATACCA
GCCAGAGAAAAGTGCCTAAGGATGTCAAAAAGAAAGCTGCTGACCGGCTT
AAAGCCAAAGCAAACAAAAAGATCGTGAGGCTTCAGATGTCTAGGGAATC
TGGAAAAGTTGTGACAATGCGAGATGTTCACAACTTGGCCTACCAGACAA
AGAAAGAACACCAGAATAGTAGAAATGATCTGGAAGaagttataaaaatt
ttaaaagaagagTTTGGTAAGTGGACATAAATGTCCTGTAAATTTGAAGT
TGGAGAAAGATTTTCTTCATTTGAAGAGCttgaaagaaagttaaaaatat
ataaagaagAGAATGCAACCGAGCTGTATAAAGTTAACACTAGATCGTTG
GAAAATGCtgttaaaagaaaatctattacaacagacaaaaatattaactc
AGATCTACGTTATTATGAACTAAATTATCGCTGTGTTGAGGGTGGAAAAT
GTTCATCAAGAAGCACAGGCAAAAGAAAGACTAAAACATTCAAGAAGGAA
TGCCCGTTTATCATAAAGTTTGGTGCTGATGAAGATGCTCAGACACTGGT
TGTGAAATCAATTAAAGATGAGCACAATCATCAGCTTGATAAAAACCTGT
TCCGACATTATACCAGCCAGAGAAAAGTGCCTAAGGATGTCAAAAAGAAA
GCTGCTGACCGGCTTAAAGCCAAAGCAAACAAAAAGATCGTGAGGCTTCA
GATGTCTAGGGAATCTGGAAAAGTTGTGACAATGCGAGATGTTCACAACT
TGGCCTACCAGACAAAGAAAGAACACCAGAATAGTAGAAATGATCTGGAA
GaagttataaaaattttaaaagaagagTTTGGTAAGTGGACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040644-exon-sc0002507-1491911889:17681..17945 | TCONS_00040644-exon-sc0002507-1491911889:17681..17945 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1510915933:17681..17945 | TCONS_00040644-exon-sc0002507-1510915933:17681..17945 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1575043694:17681..17945 | TCONS_00040644-exon-sc0002507-1575043694:17681..17945 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1491911889:18588..18696 | TCONS_00040644-exon-sc0002507-1491911889:18588..18696 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1510915933:18588..18696 | TCONS_00040644-exon-sc0002507-1510915933:18588..18696 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1575043694:18588..18696 | TCONS_00040644-exon-sc0002507-1575043694:18588..18696 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1491911889:19159..19674 | TCONS_00040644-exon-sc0002507-1491911889:19159..19674 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1510915933:19159..19674 | TCONS_00040644-exon-sc0002507-1510915933:19159..19674 | Clytia hemisphaerica | exon |
| TCONS_00040644-exon-sc0002507-1575043694:19159..19674 | TCONS_00040644-exon-sc0002507-1575043694:19159..19674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002507 | supercontig | sc0002507:17681..19674 + |
Blast
The following BLAST results are available for this feature:
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