TCONS_00040641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040641
Unique NameTCONS_00040641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040641 ID=TCONS_00040641|Name=TCONS_00040641|organism=Clytia hemisphaerica|type=transcript|length=424bp
GGATTAaacaacttttcaacttttcaactttcaaatattttcaacaacTT
TTTCAAATCAACTTCAAATATCAACACACACACTTCACACAGCTTTCAAC
TTTGGCTCACCTGGTAGGTTCATGTTTGTTTGTGTgtgtcagccattttg
ttttgcttttttaggTGTGTCTTAGGTTAAGTTAGGACTTAGAATATTTC
ACTcatttttctcatcattttttttacttaacTTTACTTTGGACATAGAT
TCTCTTTCACAAATTTCATTTACTCAGACTTAAATTCTTTTCatgtattt
taattttcaattagCCTCAAATTCATTTGTCAATTAAGACtttgtcattt
tttcattattttttcaattatttaaacataagttttttttaccttttcag
tTTGAACTTTGAACAATACCACAT
Run BLAST on NCBI

transcript from alignment at sc0002505:26756..27179

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040641 ID=TCONS_00040641|Name=TCONS_00040641|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0002505:26756..27179 (Clytia hemisphaerica)
ATGTGGTATTGTTCAAAGTTCAAactgaaaaggtaaaaaaaacttatgtt
taaataattgaaaaaataatgaaaaaatgacaaaGTCTTAATTGACAAAT
GAATTTGAGGctaattgaaaattaaaatacatGAAAAGAATTTAAGTCTG
AGTAAATGAAATTTGTGAAAGAGAATCTATGTCCAAAGTAAAgttaagta
aaaaaaatgatgagaaaaatgAGTGAAATATTCTAAGTCCTAACTTAACC
TAAGACACAcctaaaaaagcaaaacaaaatggctgacacACACAAACAAA
CATGAACCTACCAGGTGAGCCAAAGTTGAAAGCTGTGTGAAGTGTGTGTG
TTGATATTTGAAGTTGATTTGAAAAAgttgttgaaaatatttgaaagttg
aaaagttgaaaagttgttTAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024750XLOC_024750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040641-exon-sc0002505-1491911889:26756..27179TCONS_00040641-exon-sc0002505-1491911889:26756..27179Clytia hemisphaericaexon
TCONS_00040641-exon-sc0002505-1510915933:26756..27179TCONS_00040641-exon-sc0002505-1510915933:26756..27179Clytia hemisphaericaexon
TCONS_00040641-exon-sc0002505-1575043694:26756..27179TCONS_00040641-exon-sc0002505-1575043694:26756..27179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002505supercontigsc0002505:26756..27179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.6516	4.02284	4.11039	1.64511	0.572157	0.452126	0.228173	0	0.139053	0.516719	0.34344	0.219795	0.122512	0	0.0936997	0.100554	0	0	0.526237	0.734225	0.638175	0	1.5136	1.75536	0.177167	0.158117	0.501474	0	1.64836	1.73647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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