TCONS_00040640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040640
Unique NameTCONS_00040640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040640 ID=TCONS_00040640|Name=TCONS_00040640|organism=Clytia hemisphaerica|type=transcript|length=481bp
GTCAATGTCAAGACAAAAAAGATTCCCTCGAATCGATTATCGCAAACTCA
ACTCAACGGGTGAACGTGTTCCCATCACTGCAGAGAACCTTTCATCCAGA
CTTCAAAACCTATCAATCAACGATACCTCATCAACAGATTCAATTGAGAT
GGCCGATCCCAGCAAAGATGCCGTCGAGCTGGTCCTCATGTCTCAAGCTG
TCACGGATATAACAAATGAAACTCCAATTCAAACCATGGAACCAGATCAG
GTCACTGCTATCTTTGATAAAGTCGAAAAAATTCGTTTCGACATGAATCG
ATTACAACTCACCATCAAACTCAGAAAAGAAGTCTTACCANAccccaaaa
agggcaaaaaggaTTGGGAAGCTCTCGTAAACTTTGGAATGATATTTTTG
CCCTAAAGTTTTGCATACCTACCCTCAGTTATCTATCTTGACGAATCCTG
AGAATATTTCCCAAAGTAAATTCGTTATTTC
Run BLAST on NCBI

protein sequence of TCONS_00040640-protein

>TCONS_00040640-protein ID=TCONS_00040640-protein|Name=TCONS_00040640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
SMSRQKRFPRIDYRKLNSTGERVPITAENLSSRLQNLSINDTSSTDSIEM
ADPSKDAVELVLMSQAVTDITNETPIQTMEPDQVTAIFDKVEKIRFDMNR
LQLTIKLRKEVLPXPKKGKKDWEALVNFGMIFLP
Run BLAST on NCBI

transcript from alignment at sc0002505:26020..26500

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040640 ID=TCONS_00040640|Name=TCONS_00040640|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0002505:26020..26500 (Clytia hemisphaerica)
GAAATAACGAATTTACTTTGGGAAATATTCTCAGGATTCGTCAAGATAGA
TAACTGAGGGTAGGTATGCAAAACTTTAGGGCAAAAATATCATTCCAAAG
TTTACGAGAGCTTCCCAAtcctttttgccctttttggggTNTGGTAAGAC
TTCTTTTCTGAGTTTGATGGTGAGTTGTAATCGATTCATGTCGAAACGAA
TTTTTTCGACTTTATCAAAGATAGCAGTGACCTGATCTGGTTCCATGGTT
TGAATTGGAGTTTCATTTGTTATATCCGTGACAGCTTGAGACATGAGGAC
CAGCTCGACGGCATCTTTGCTGGGATCGGCCATCTCAATTGAATCTGTTG
ATGAGGTATCGTTGATTGATAGGTTTTGAAGTCTGGATGAAAGGTTCTCT
GCAGTGATGGGAACACGTTCACCCGTTGAGTTGAGTTTGCGATAATCGAT
TCGAGGGAATCTTTTTTGTCTTGACATTGAC

Coding sequence (CDS) from alignment at sc0002505:26020..26500

>TCONS_00040640 ID=TCONS_00040640|Name=TCONS_00040640|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0002505:26020..26500 (Clytia hemisphaerica)
TTAGGGCAAAAATATCATTCCAAAGTTTACGAGAGCTTCCCAAtcctttt
tgccctttttggggTNTGGTAAGACTTCTTTTCTGAGTTTGATGGTGAGT
TGTAATCGATTCATGTCGAAACGAATTTTTTCGACTTTATCAAAGATAGC
AGTGACCTGATCTGGTTCCATGGTTTGAATTGGAGTTTCATTTGTTATAT
CCGTGACAGCTTGAGACATGAGGACCAGCTCGACGGCATCTTTGCTGGGA
TCGGCCATCTCAATTGAATCTGTTGATGAGGTATCGTTGATTGATAGGTT
TTGAAGTCTGGATGAAAGGTTCTCTGCAGTGATGGGAACACGTTCACCCG
TTGAGTTGAGTTTGCGATAATCGATTCGAGGGAATCTTTTTTGTCTTGAC
ATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024749XLOC_024749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040640-proteinTCONS_00040640-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040640-exon-sc0002505-1491911889:26020..26500TCONS_00040640-exon-sc0002505-1491911889:26020..26500Clytia hemisphaericaexon
TCONS_00040640-exon-sc0002505-1510915933:26020..26500TCONS_00040640-exon-sc0002505-1510915933:26020..26500Clytia hemisphaericaexon
TCONS_00040640-exon-sc0002505-1575043694:26020..26500TCONS_00040640-exon-sc0002505-1575043694:26020..26500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002505supercontigsc0002505:26020..26500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745877	1.40168	1.41654	0.164318	0.434723	0.24579	0.629832	0.469227	0.109913	0.544581	0.418691	0.220822	0.422574	0.138237	0.123843	0.0915427	0.098599	0.404269	0.222562	0.486137	0.159629	0.184536	0.149751	0	0	1.13099	0.178849	0	0.292258	0.362609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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