TCONS_00040638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040638
Unique NameTCONS_00040638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040638 ID=TCONS_00040638|Name=TCONS_00040638|organism=Clytia hemisphaerica|type=transcript|length=306bp
gtgggggaatcgaaccctggacCACCTGATCTTGaatctgatgctctacc
gactgagcaaGTTAGTCATGTTTCTTCTATGAGAGCAAATGTCTCTATAT
Taccataaaaagtaataaaaaatgacgtaatgtaattgcgtaaaacattt
tcattcgcGCATACAAACAATAGGCAggattttcattgttattttgtcGT
TTTTATACATTTGAGAGTATTCCGATCAGAATAACAACTAATACTGAAAG
TATTCATTTACTCATATTGAGTTCTTTTTTACTCGTACATAATTATCAGA
GAAGCA
Run BLAST on NCBI

transcript from alignment at sc0002504:20252..20557

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040638 ID=TCONS_00040638|Name=TCONS_00040638|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0002504:20252..20557 (Clytia hemisphaerica)
TGCTTCTCTGATAATTATGTACGAGTAAAAAAGAACTCAATATGAGTAAA
TGAATACTTTCAGTATTAGTTGTTATTCTGATCGGAATACTCTCAAATGT
ATAAAAACgacaaaataacaatgaaaatccTGCCTATTGTTTGTATGCgc
gaatgaaaatgttttacgcaattacattacgtcattttttattacttttt
atggtAATATAGAGACATTTGCTCTCATAGAAGAAACATGACTAACttgc
tcagtcggtagagcatcagattCAAGATCAGGTGgtccagggttcgattc
ccccac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024747XLOC_024747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040638-exon-sc0002504-1491911889:20252..20557TCONS_00040638-exon-sc0002504-1491911889:20252..20557Clytia hemisphaericaexon
TCONS_00040638-exon-sc0002504-1510915933:20252..20557TCONS_00040638-exon-sc0002504-1510915933:20252..20557Clytia hemisphaericaexon
TCONS_00040638-exon-sc0002504-1575043694:20252..20557TCONS_00040638-exon-sc0002504-1575043694:20252..20557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002504supercontigsc0002504:20252..20557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365494	0.356415	1.37371	1.76992	2.14049	0.389488	2.8194	1.87942	1.43619	1.29013	0.74059	0.243417	1.0561	0	0.20754	0.222722	0.548751	1.40613	0.388529	0	0.432474	1.12853	0.519872	0.8765	1.96208	6.6542	1.16045	0	0.811341	0.413314
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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