TCONS_00040631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040631
Unique NameTCONS_00040631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040631 ID=TCONS_00040631|Name=TCONS_00040631|organism=Clytia hemisphaerica|type=transcript|length=516bp
cagccaccgaggcAAAACACGAAAAAGCCGTTCCTTTTTGCCagccagga
gaaaatttctataaaatgaacATAATCGGGTTGTCCGGAACGTCTccaaa
tttccagctggaaaagaaaaatatgccaGAAAAATGGAACAAATTGCACG
GGAACagctctcaaaaaaaaagtttcgaccttttccttaaaatagCCGTT
CACATTTGCCAGGAGGAGATATACAAATTTATAGGAACGGCTctttattt
ccagctggaaatgaaaaaggaaaataaatgtaGCAAACGTCAGAGCAATA
TAGATATTTTATGGGAACggctctctatttccagctggagataaaaaagg
aaaaatgttaGAACGATATAGATATTTTATGGGAACGGCcctctatttcc
agctggaaataaaaatgcaaaaataactgTCCCAAAATTGCCTAGAATGA
TTACAGTATTTAATGGGAACGGCACTGTATTTCCAGCTGAAAAGAGGTGA
AAATGTAGCACTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00040631-protein

>TCONS_00040631-protein ID=TCONS_00040631-protein|Name=TCONS_00040631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
ATEAKHEKAVPFCQPGENFYKMNIIGLSGTSPNFQLEKKNMPEKWNKLHG
NSSQKKSFDLFLKIAVHICQEEIYKFIGTALYFQLEMKKENKCSKRQSNI
DILWERLSISSWR
Run BLAST on NCBI

transcript from alignment at sc0002500:18797..19312

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040631 ID=TCONS_00040631|Name=TCONS_00040631|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0002500:18797..19312 (Clytia hemisphaerica)
CAAGAGTGCTACATTTTCACCTCTTTTCAGCTGGAAATACAGTGCCGTTC
CCATTAAATACTGTAATCATTCTAGGCAATTTTGGGAcagttatttttgc
atttttatttccagctggaaatagaggGCCGTTCCCATAAAATATCTATA
TCGTTCtaacatttttccttttttatctccagctggaaatagagagccGT
TCCCATAAAATATCTATATTGCTCTGACGTTTGCtacatttattttcctt
tttcatttccagctggaaataaagAGCCGTTCCTATAAATTTGTATATCT
CCTCCTGGCAAATGTGAACGGctattttaaggaaaaggtcgaaacttttt
ttttgagagctGTTCCCGTGCAATTTGTTCCATTTTTCtggcatattttt
cttttccagctggaaatttggAGACGTTCCGGACAACCCGATTATgttca
ttttatagaaattttctcctggctGGCAAAAAGGAACGGCTTTTTCGTGT
TTTgcctcggtggctg

Coding sequence (CDS) from alignment at sc0002500:18797..19312

>TCONS_00040631 ID=TCONS_00040631|Name=TCONS_00040631|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0002500:18797..19312 (Clytia hemisphaerica)
ttatctccagctggaaatagagagccGTTCCCATAAAATATCTATATTGC
TCTGACGTTTGCtacatttattttcctttttcatttccagctggaaataa
agAGCCGTTCCTATAAATTTGTATATCTCCTCCTGGCAAATGTGAACGGc
tattttaaggaaaaggtcgaaactttttttttgagagctGTTCCCGTGCA
ATTTGTTCCATTTTTCtggcatatttttcttttccagctggaaatttggA
GACGTTCCGGACAACCCGATTATgttcattttatagaaattttctcctgg
ctGGCAAAAAGGAACGGCTTTTTCGTGTTTTgcctcggtggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024742XLOC_024742Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040631-proteinTCONS_00040631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040631-exon-sc0002500-1491911889:18797..19312TCONS_00040631-exon-sc0002500-1491911889:18797..19312Clytia hemisphaericaexon
TCONS_00040631-exon-sc0002500-1510915933:18797..19312TCONS_00040631-exon-sc0002500-1510915933:18797..19312Clytia hemisphaericaexon
TCONS_00040631-exon-sc0002500-1575043694:18797..19312TCONS_00040631-exon-sc0002500-1575043694:18797..19312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002500supercontigsc0002500:18797..19312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.356568	0	0	0.29106	0.78743	0	1.36365	1.0141	1.68714	0.382759	2.76318	1.12836	2.51658	1.82761	1.84974	0.992731	0.19252	0.75335	3.29441	2.12535	1.12971	1.35549	0	0.485897	0.465392	0.911372	0.62838	0.383527	0.804417	0.470334
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top