TCONS_00040609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040609
Unique NameTCONS_00040609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040609 ID=TCONS_00040609|Name=TCONS_00040609|organism=Clytia hemisphaerica|type=transcript|length=562bp
AAAGCCTTCAAGaattcatgaaaataattaACAGCTTTCATCCCTCCATC
AAATTTACCTTTGAATACTCTCCGACTTCTGTCAATTTTTTAGATGTCCA
AGTCATTAGGGTTAATGATAAGTTAGTGACGGACCTGTATGTCAAACCTA
CTGATACCCATCAGTATTTGGATGCATCCTCGTGCGGCgcatttcattca
aaaaaggcTATCCCATATAGCCAAGCTTTGCGTTTAAATCGCATCTGTTC
TgaacaatctttttttgacCTTAGATGCAACCAGCTAGCATTGTGGCTAA
AAAAGCGAGGATACAGTGATAAACTGGTTCGTCAAGAGATCCTTAGGGCC
AGAGAACCGAAGCGAGATGATTTGCTCTTTAGAgagcaaaacaataaaaa
aactcgTGGACGTAAGCCGGTGTTCAATATAACTTATCATCCTGCctttg
ccaaaatcaaaaatgtcttGCAGGACATTCAGGTACTCCTCTCAGCGGCG
AATGAAGAACATCGCAAGGTGTTTTCTGATGTGCCTATTGTTGGCTTTAA
Ggcatgtgtaca
Run BLAST on NCBI

transcript from alignment at sc0002492:21358..21919

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040609 ID=TCONS_00040609|Name=TCONS_00040609|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0002492:21358..21919 (Clytia hemisphaerica)
tgtacacatgcCTTAAAGCCAACAATAGGCACATCAGAAAACACCTTGCG
ATGTTCTTCATTCGCCGCTGAGAGGAGTACCTGAATGTCCTGCaagacat
ttttgattttggcaaagGCAGGATGATAAGTTATATTGAACACCGGCTTA
CGTCCAcgagtttttttattgttttgctcTCTAAAGAGCAAATCATCTCG
CTTCGGTTCTCTGGCCCTAAGGATCTCTTGACGAACCAGTTTATCACTGT
ATCCTCGCTTTTTTAGCCACAATGCTAGCTGGTTGCATCTAAGgtcaaaa
aaagattgttcAGAACAGATGCGATTTAAACGCAAAGCTTGGCTATATGG
GATAgccttttttgaatgaaatgcGCCGCACGAGGATGCATCCAAATACT
GATGGGTATCAGTAGGTTTGACATACAGGTCCGTCACTAACTTATCATTA
ACCCTAATGACTTGGACATCTAAAAAATTGACAGAAGTCGGAGAGTATTC
AAAGGTAAATTTGATGGAGGGATGAAAGCTGTtaattattttcatgaatt
CTTGAAGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024727XLOC_024727Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040609-exon-sc0002492-1491911889:21358..21919TCONS_00040609-exon-sc0002492-1491911889:21358..21919Clytia hemisphaericaexon
TCONS_00040609-exon-sc0002492-1510915933:21358..21919TCONS_00040609-exon-sc0002492-1510915933:21358..21919Clytia hemisphaericaexon
TCONS_00040609-exon-sc0002492-1575043694:21358..21919TCONS_00040609-exon-sc0002492-1575043694:21358..21919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002492supercontigsc0002492:21358..21919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201007	0.0980068	0.455181	0	0	0	1.15547	0.68819	0.925057	0	0	0.988372	0.851243	0.617114	1.32167	1.15992	0	0.357821	1.52654	2.11624	0.162647	0.329051	0.268734	0	0.398625	0.0621961	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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