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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040599 ID=TCONS_00040599|Name=TCONS_00040599|organism=Clytia hemisphaerica|type=transcript|length=723bp
ttccagacGATGGATGTACAAAGAAAAGCCTTGGTTTAGATTGGTATTTA
CCGGATAATAAACAGCTACCGGACAGTCAAATTACCGCTTCCTCGGAAGT
GCCATACCGTTTGGCGAAATACGGACGATTCAGAAGTGAGGCTGTTGGAC
GAATATTCGGTGTATGGTGCGCAGAAAAGAATGATCAAAAGCCGTGGTGG
CAAGTTGACTTCCTCGCTATGCGTACCATCACAGCGATACGGATCGGTTC
CAATGGATACGCAGACGGCTACGTAACACGTTTTACGTTACACTTCAGTT
ATGACGGGAATGATTGGTTTACAGTGAAGGATTCGAAAACGAACAAATCA
AAGGTCAGTCAATGAACGCTACAATAATAACGCTATACTGTTTATAAGGA
GAATACCATAAAATATTGACCGatggccaaaaattaagaatatgctaaga
ataccaGAATAATGGAATAATGGAATTTGGCAACAGagcctaagaatgcc
atttttagagcatttttccAATGAATATttctaaaggttttgtttttaca
taagtaagtgttcccgtttccatggctggaacccccccccctggcctgag
ggggggggctaaaaggtcgaACAGCGTTTGGTACCTAATTTTggcctgtg
gctaggggggactaaccatgttaggggtcacctaaattttttcagatgga
tctgcctgggggctagattctat Run BLAST on NCBI protein sequence of TCONS_00040599-protein >TCONS_00040599-protein ID=TCONS_00040599-protein|Name=TCONS_00040599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
PDDGCTKKSLGLDWYLPDNKQLPDSQITASSEVPYRLAKYGRFRSEAVGR
IFGVWCAEKNDQKPWWQVDFLAMRTITAIRIGSNGYADGYVTRFTLHFSY
DGNDWFTVKDSKTNKSKVSQ Run BLAST on NCBI transcript from alignment at sc0002489:11718..13261+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040599 ID=TCONS_00040599|Name=TCONS_00040599|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0002489:11718..13261+ (Clytia hemisphaerica)
ttccagacGATGGATGTACAAAGAAAAGCCTTGGTTTAGATTGGTATTTA
CCGGATAATAAACAGCTACCGGACAGTCAAATTACCGCTTCCTCGGAAGT
GCCATACCGTTTGGCGAAATACGGACGATTCAGAAGTGAGGCGTAAGTTA
TTTATACCTGCTATTTCGATATTTCAATGGACTATAAGAGTCGAGATTCT
TAGAAATTATCCGATTcggaatttttcttttaaattattttcGTTTCATA
GTTACATATGGCGCGCCGAATTACTTTTtattaccaacttttttttcgac
accaaattttttttttcgacattaacttttgttttttgacatcaattttt
ttttctgataccAACTTTTCGTTTTTTGCGACAAACTTCATGTTTTTTCA
TACCAGCTTTTCTCCgacaccaattttttttttccgacaccaactttttt
tccgataccaactttttttcgaGACCCGGATATGAAACTTCTTTTTTACG
AAGTCAACCTTTTTGGTTATTGTCTCGCCCACCCAACCTGATTAGTATAA
TGTGTGTCTGGGGCTTTAACAAATTACACGCGACATGTGAAACTTTTCCA
GAtggaattgaaaaaataaagagCTAAAACACCAGCATGAATACTGACTG
ACTTTAGGACGAAGTCTGGAAGTTTGTTTTGGTTGAACTTGAAGTCATTC
TTTATAGTTAAGTACTTTGTGTTTTACTTCAAATTtgcactccatctagc
ccttcgggctttacagaaatctgtgatcGGATGCGCATGTGCATGTATTT
ACCGCTATATAAACGTAAAGGCCTTTTTACACTTTGAGTAATCAACGTTA
GCAGGTAATCGAGACAAGAGTTAGTAAAAAGTTATTTGTCCTCGCTcgat
tttcctatgaaaatttTGCATTAGTTtctaacaaaaatttgattatcTCT
CTATTTGTTTCAGTGTTGGACGAATATTCGGTGTATGGTGCGCAGAAAAG
AATGATCAAAAGCCGTGGTGGCAAGTTGACTTCCTCGCTATGCGTACCAT
CACAGCGATACGGATCGGTTCCAATGGATACGCAGACGGCTACGTAACAC
GTTTTACGTTACACTTCAGTTATGACGGGAATGATTGGTTTACAGTGAAG
GATTCGAAAACGAACAAATCAAAGGTCAGTCAATGAACGCTACAATAATA
ACGCTATACTGTTTATAAGGAGAATACCATAAAATATTGACCGatggcca
aaaattaagaatatgctaagaataccaGAATAATGGAATAATGGAATTTG
GCAACAGagcctaagaatgccatttttagagcatttttccAATGAATATt
tctaaaggttttgtttttacataagtaagtgttcccgtttccatggctgg
aacccccccccctggcctgagggggggggctaaaaggtcgaACAGCGTTT
GGTACCTAATTTTggcctgtggctaggggggactaaccatgttaggggtc
acctaaattttttcagatggatctgcctgggggctagattctat Coding sequence (CDS) from alignment at sc0002489:11718..13261+ >TCONS_00040599 ID=TCONS_00040599|Name=TCONS_00040599|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0002489:11718..13261+ (Clytia hemisphaerica)
ccagacGATGGATGTACAAAGAAAAGCCTTGGTTTAGATTGGTATTTACC
GGATAATAAACAGCTACCGGACAGTCAAATTACCGCTTCCTCGGAAGTGC
CATACCGTTTGGCGAAATACGGACGATTCAGAAGTGAGGCTGTTGGACGA
ATATTCGGTGTATGGTGCGCAGAAAAGAATGATCAAAAGCCGTGGTGGCA
AGTTGACTTCCTCGCTATGCGTACCATCACAGCGATACGGATCGGTTCCA
ATGGATACGCAGACGGCTACGTAACACGTTTTACGTTACACTTCAGTTAT
GACGGGAATGATTGGTTTACAGTGAAGGATTCGAAAACGAACAAATCAAA
GGTCAGTCAATGAccagacGATGGATGTACAAAGAAAAGCCTTGGTTTAG
ATTGGTATTTACCGGATAATAAACAGCTACCGGACAGTCAAATTACCGCT
TCCTCGGAAGTGCCATACCGTTTGGCGAAATACGGACGATTCAGAAGTGA
GGCTGTTGGACGAATATTCGGTGTATGGTGCGCAGAAAAGAATGATCAAA
AGCCGTGGTGGCAAGTTGACTTCCTCGCTATGCGTACCATCACAGCGATA
CGGATCGGTTCCAATGGATACGCAGACGGCTACGTAACACGTTTTACGTT
ACACTTCAGTTATGACGGGAATGATTGGTTTACAGTGAAGGATTCGAAAA
CGAACAAATCAAAGGTCAGTCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040599-exon-sc0002489-1491911889:11718..11859 | TCONS_00040599-exon-sc0002489-1491911889:11718..11859 | Clytia hemisphaerica | exon |
| TCONS_00040599-exon-sc0002489-1510915933:11718..11859 | TCONS_00040599-exon-sc0002489-1510915933:11718..11859 | Clytia hemisphaerica | exon |
| TCONS_00040599-exon-sc0002489-1575043694:11718..11859 | TCONS_00040599-exon-sc0002489-1575043694:11718..11859 | Clytia hemisphaerica | exon |
| TCONS_00040599-exon-sc0002489-1491911889:12681..13261 | TCONS_00040599-exon-sc0002489-1491911889:12681..13261 | Clytia hemisphaerica | exon |
| TCONS_00040599-exon-sc0002489-1510915933:12681..13261 | TCONS_00040599-exon-sc0002489-1510915933:12681..13261 | Clytia hemisphaerica | exon |
| TCONS_00040599-exon-sc0002489-1575043694:12681..13261 | TCONS_00040599-exon-sc0002489-1575043694:12681..13261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002489 | supercontig | sc0002489:11718..13261 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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