TCONS_00040592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040592
Unique NameTCONS_00040592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040592 ID=TCONS_00040592|Name=TCONS_00040592|organism=Clytia hemisphaerica|type=transcript|length=651bp
AAACATTCAGCGAAGACATCCAGATGAATTTCGGAATTGAAAAGTGCAAT
AAAGTGACAATCAAACGGGGAAAAATCACGAACAGCGACAACATCGTACT
CGACAATGGTGAGATACTAAAAACCCTAGACCAAAACAAACAATACAAAT
ACCTCGGGTTCAATGAACACCAACTTACTGACAAATACACCAAATCAACA
CTCAAAAATGAGTACTTTAAAAGACTGAAGATGCTACTCAAAAGCGAACT
CAACAGCCTCAACACAATATCCGCCATCAACTCTTATGCCGTCCCAGCTC
TGTCGTATGGCTTTCCTGTACTGGACTGGACGATCACTGAGCTAGAGAAC
ATCGACCGCGAAACGAGAAAAGTCTTGCAATCATTCCACGTGATGCACAA
CCAAAGTGACGTAACAAGACTCTACCTCCCGAGAAAAGAAGGTGGAAGGG
GTCTTATCAACATCGTTGACCACTTCAAAAACTGCATTATCAACTTCAGC
TCCTACCTACTAACATCAAACGAACCCTATCTGACCTTGCTATCCAACTG
GCAACTCACCCGCGGTGCAAAATCGATTCACGCTATGGCCCAGTCATACA
GCCAAGAAATCTCTCTCGAAATACAGCAGCTTTCCATCCTTTCAAAAAGC
C
Run BLAST on NCBI

protein sequence of TCONS_00040592-protein

>TCONS_00040592-protein ID=TCONS_00040592-protein|Name=TCONS_00040592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
TFSEDIQMNFGIEKCNKVTIKRGKITNSDNIVLDNGEILKTLDQNKQYKY
LGFNEHQLTDKYTKSTLKNEYFKRLKMLLKSELNSLNTISAINSYAVPAL
SYGFPVLDWTITELENIDRETRKVLQSFHVMHNQSDVTRLYLPRKEGGRG
LINIVDHFKNCIINFSSYLLTSNEPYLTLLSNWQLTRGAKSIHAMAQSYS
QEISLEIQQLSILSKS
Run BLAST on NCBI

transcript from alignment at sc0002485:19090..19740

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040592 ID=TCONS_00040592|Name=TCONS_00040592|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0002485:19090..19740 (Clytia hemisphaerica)
GGCTTTTTGAAAGGATGGAAAGCTGCTGTATTTCGAGAGAGATTTCTTGG
CTGTATGACTGGGCCATAGCGTGAATCGATTTTGCACCGCGGGTGAGTTG
CCAGTTGGATAGCAAGGTCAGATAGGGTTCGTTTGATGTTAGTAGGTAGG
AGCTGAAGTTGATAATGCAGTTTTTGAAGTGGTCAACGATGTTGATAAGA
CCCCTTCCACCTTCTTTTCTCGGGAGGTAGAGTCTTGTTACGTCACTTTG
GTTGTGCATCACGTGGAATGATTGCAAGACTTTTCTCGTTTCGCGGTCGA
TGTTCTCTAGCTCAGTGATCGTCCAGTCCAGTACAGGAAAGCCATACGAC
AGAGCTGGGACGGCATAAGAGTTGATGGCGGATATTGTGTTGAGGCTGTT
GAGTTCGCTTTTGAGTAGCATCTTCAGTCTTTTAAAGTACTCATTTTTGA
GTGTTGATTTGGTGTATTTGTCAGTAAGTTGGTGTTCATTGAACCCGAGG
TATTTGTATTGTTTGTTTTGGTCTAGGGTTTTTAGTATCTCACCATTGTC
GAGTACGATGTTGTCGCTGTTCGTGATTTTTCCCCGTTTGATTGTCACTT
TATTGCACTTTTCAATTCCGAAATTCATCTGGATGTCTTCGCTGAATGTT
T

Coding sequence (CDS) from alignment at sc0002485:19090..19740

>TCONS_00040592 ID=TCONS_00040592|Name=TCONS_00040592|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0002485:19090..19740 (Clytia hemisphaerica)
GCTTTTTGAAAGGATGGAAAGCTGCTGTATTTCGAGAGAGATTTCTTGGC
TGTATGACTGGGCCATAGCGTGAATCGATTTTGCACCGCGGGTGAGTTGC
CAGTTGGATAGCAAGGTCAGATAGGGTTCGTTTGATGTTAGTAGGTAGGA
GCTGAAGTTGATAATGCAGTTTTTGAAGTGGTCAACGATGTTGATAAGAC
CCCTTCCACCTTCTTTTCTCGGGAGGTAGAGTCTTGTTACGTCACTTTGG
TTGTGCATCACGTGGAATGATTGCAAGACTTTTCTCGTTTCGCGGTCGAT
GTTCTCTAGCTCAGTGATCGTCCAGTCCAGTACAGGAAAGCCATACGACA
GAGCTGGGACGGCATAAGAGTTGATGGCGGATATTGTGTTGAGGCTGTTG
AGTTCGCTTTTGAGTAGCATCTTCAGTCTTTTAAAGTACTCATTTTTGAG
TGTTGATTTGGTGTATTTGTCAGTAAGTTGGTGTTCATTGAACCCGAGGT
ATTTGTATTGTTTGTTTTGGTCTAGGGTTTTTAGTATCTCACCATTGTCG
AGTACGATGTTGTCGCTGTTCGTGATTTTTCCCCGTTTGATTGTCACTTT
ATTGCACTTTTCAATTCCGAAATTCATCTGGATGTCTTCGCTGAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024710XLOC_024710Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040592-proteinTCONS_00040592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040592-exon-sc0002485-1491911889:19090..19740TCONS_00040592-exon-sc0002485-1491911889:19090..19740Clytia hemisphaericaexon
TCONS_00040592-exon-sc0002485-1510915933:19090..19740TCONS_00040592-exon-sc0002485-1510915933:19090..19740Clytia hemisphaericaexon
TCONS_00040592-exon-sc0002485-1575043694:19090..19740TCONS_00040592-exon-sc0002485-1575043694:19090..19740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002485supercontigsc0002485:19090..19740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339715	0.275062	0	0	0	0.0855356	0	0	0	0	0	0.160371	0	0	0	0.0978241	0	0	0	0	0.0776061	0	0.0920319	0	2.37419	0.615298	0	0.11746	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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