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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040590 ID=TCONS_00040590|Name=TCONS_00040590|organism=Clytia hemisphaerica|type=transcript|length=478bp
tttttggcCCAGCGTTAGCGAACGGGCCTTTCAAAAGCAACTGTCTGTTT
GTCcgtcccactttcgttttcgtttttacAAAAACCGCGCTCCTTCTAAA
TTGTAGACTAGCAAGTGTCCGTATTGCGTATTGTATTCAGTGAAGGGAGT
TAGTCTGTTGCAAGGGGAGCTGCAGAGTGAAATACAACGACTAGTTACTA
GTCTATctaagttgttgttgttgtagatCTCGCGCTCTTTGCATTTTATA
GctcaaaatggcggattaagtggagacaaagtttttttctcCTCCTGAAA
TATCAGACCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTG
CTGTTTACAGATTTATTGATATACAATCGCTATTTTTCGTGATTATTCAT
CCTTTTACTGTGTTGTTTGCTGCTTGCTCATTTGTAAAACAAGAGCTTGA
AAACCAACTGCGTGGACAATTCCTGACC Run BLAST on NCBI transcript from alignment at sc0002485:10363..12562+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040590 ID=TCONS_00040590|Name=TCONS_00040590|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at sc0002485:10363..12562+ (Clytia hemisphaerica)
tttttggcCCAGCGTTAGCGAACGGGCCTTTCAAAAGCAACTGTCTGTTT
GTCcgtcccactttcgttttcgtttttacAAAAACCGCGCTCCTTCTAAA
TTGTAGACTAGCAAGTGTCCGTATTGCGTATTGTATTCAGTGAAGGGAGT
TAGTCTGTTGCAAGGGGAGCTGCAGAGTGAAATACAACGACTAGTTACTA
GTCTATctaagttgttgttgttgtagatCTCGCGCTCTTTGCATTTTATA
GctcaaaatggcggattaagtggagacaaagtttttttctcCTCCTGAAA
TATCAGACCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTG
CTGTTTACAGATTTATTGATATACAATCGCTATTTTTCGTGATTATTCAT
CCTTTTACTGTGTTGTTTGCTGCTTGCTCATTTGTAAAACAAGAGGTATG
TATTTTGgaataaaatttttcagatCGAGTAGAATAGGCCACAAAACGTC
TAATCCTGACCACCCCTTTCTAATCCTGACCTACctctaaaacaaacaat
ttttccaaatttagatGGTATTTTAGTAGATTAGTTCTTCTTCATACTat
taaattaaagtttttaaagtAAAGACAGTATTTTCTGTAAAATTAGTATT
AGAGGTAGGTCAGGATTAGAAAGGGGTGGTCAGGATTAGACAATCTGACA
ATATCAGATTCAAGATTTTTCTGCTATAAAAATGATTCTGTATTGGTAAT
CCAgtactttcaaaaaaacattttacctcGGAAAACCTGTGTCGTCCACC
GCCTTATAACAGACTTAAACTGGAGCAGCCCAATGCCCGTTTCCAGACaa
tgtcaatcgaacgcaattgaatgaTGCGAttaattcgattgtcgaataca
atttaatcgcaatcaaatattacccaggatttatTGCCGTTCGATTATGA
GATATAATCGAATCAATTGAATATTACTTACTCTAACTAAAGTGTGCCTC
atttaatttttgtgattttagggTGCGGGCTTTTTAAATAGGGGACAACG
CTTAATAGAGGGCGGTGCTTGATAGAGGGAATTCTGTGGTCGCGGCCTTG
TCtgatcaaacgcaatcgaacatcattGTCCATGAATCGAACGAATCAAA
CGAAATTGACagtcaatcaaaccaatcattAACGCATGTCCCTGGCAACC
CCAGAAATTTCCAGGGCGATATGGGGGTAGACATTAATTGCCCGGTTTTC
CTCTTGCCTTTTCTTCCGCTCTACCCCGAAAACGAGCATGACGAAGGAGA
GAACGGCCACAACCATTGCCTAGTAAAATTTTGGACAGTCAATTTGGCTG
TGTTTGAatacatagaccttttttcaaagaggccaccctgttgaataatt
atgtagtgcagcagaaaaacaatgataaaaccatgcataattattacaat
atgcatgatacagtaattatgcatggctttatcattgtttttatggctgg
actacataattattcaacaggacgtcctctttgaaaaaaggtctattctc
ttTTACATCTTTTACTTctttgacgaaagattttcgaattttttatcggc
atttgGCTGATTAGGGGGGGGAGGAGTTCCAACTACATGCCGATAAAAAA
GCAAGTATTGTGACGAAAATCTTTTTAgccaatttctttttgatttcgtc
cacaaacttcactgaaagcatacaatttcacttgctttcacctttGCGCA
CAATTTAATCGcaactttaaaagtacagttttgaattagctttgataaaa
aaactcttcTTTCATTGGCCAGCGCACTGCCTTTTCTTACAAAATGTTGA
TAATTCATTGcgtctttttaaaaaacttttggaactaattttcacggttt
ttctcaaaaattattattgtaatttttatgTGTTACACCAGGATcaactg
tgaaaattttagaattgaactaaccgcaaaaattaattcccggaaaatgc
aatttttctgattttttcacggaccgtgaaaattagttccctttaaGGTA
CATAGAACAAACATAGCAGAATTATTATTAGAACAACCTTTCATCTGCTT
CAAAATGGTTATAAAAttggtaaattttcaaattctttgatgTTAAATTA
ATATTTCTTCTTTTCAGCTTGAAAACCAACTGCGTGGACAATTCCTGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040590-exon-sc0002485-1491911889:10363..10807 | TCONS_00040590-exon-sc0002485-1491911889:10363..10807 | Clytia hemisphaerica | exon |
| TCONS_00040590-exon-sc0002485-1510915933:10363..10807 | TCONS_00040590-exon-sc0002485-1510915933:10363..10807 | Clytia hemisphaerica | exon |
| TCONS_00040590-exon-sc0002485-1575043694:10363..10807 | TCONS_00040590-exon-sc0002485-1575043694:10363..10807 | Clytia hemisphaerica | exon |
| TCONS_00040590-exon-sc0002485-1491911889:12530..12562 | TCONS_00040590-exon-sc0002485-1491911889:12530..12562 | Clytia hemisphaerica | exon |
| TCONS_00040590-exon-sc0002485-1510915933:12530..12562 | TCONS_00040590-exon-sc0002485-1510915933:12530..12562 | Clytia hemisphaerica | exon |
| TCONS_00040590-exon-sc0002485-1575043694:12530..12562 | TCONS_00040590-exon-sc0002485-1575043694:12530..12562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002485 | supercontig | sc0002485:10363..12562 + |
Blast
The following BLAST results are available for this feature:
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