TCONS_00040588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040588
Unique NameTCONS_00040588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040588 ID=TCONS_00040588|Name=TCONS_00040588|organism=Clytia hemisphaerica|type=transcript|length=360bp
CGATTTAATGAGAGATCGTATTTGCGAGAGACTCAAGAGTAGTGCCTTAA
CCCTCGAGGACGCGACCGTGCATTGGGACGAGGAATATGTAATTTCCTCT
CACGAAGGGGTTTGTGGCGCATCCGGCCGGTTCGCAATCACTACTTTCTA
CAAAATATTACCACGTTCAAATTTACAACAATGACACTCGAGCCAAGAAT
TTATTATACAGTACTCAACGAATAAACTTCTTGTATTTTATCCGCTGTCC
AGAGTATCCTCAGTGCTTGCAAAGACCCGTCCACcaaattataaagaaaa
cacTGTGTCTTTTCTTCTGTGGGTATGGGAGTGAGGAGTTTAGGGTGTGG
GAAGTTACTA
Run BLAST on NCBI

transcript from alignment at sc0002483:13906..14265

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040588 ID=TCONS_00040588|Name=TCONS_00040588|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0002483:13906..14265 (Clytia hemisphaerica)
TAGTAACTTCCCACACCCTAAACTCCTCACTCCCATACCCACAGAAGAAA
AGACACAgtgttttctttataatttgGTGGACGGGTCTTTGCAAGCACTG
AGGATACTCTGGACAGCGGATAAAATACAAGAAGTTTATTCGTTGAGTAC
TGTATAATAAATTCTTGGCTCGAGTGTCATTGTTGTAAATTTGAACGTGG
TAATATTTTGTAGAAAGTAGTGATTGCGAACCGGCCGGATGCGCCACAAA
CCCCTTCGTGAGAGGAAATTACATATTCCTCGTCCCAATGCACGGTCGCG
TCCTCGAGGGTTAAGGCACTACTCTTGAGTCTCTCGCAAATACGATCTCT
CATTAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024706XLOC_024706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040588-exon-sc0002483-1491911889:13906..14265TCONS_00040588-exon-sc0002483-1491911889:13906..14265Clytia hemisphaericaexon
TCONS_00040588-exon-sc0002483-1510915933:13906..14265TCONS_00040588-exon-sc0002483-1510915933:13906..14265Clytia hemisphaericaexon
TCONS_00040588-exon-sc0002483-1575043694:13906..14265TCONS_00040588-exon-sc0002483-1575043694:13906..14265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002483supercontigsc0002483:13906..14265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6241	16.3374	4.30849	2.49999	54.0682	34.1882	83.6779	79.4568	56.5859	44.6343	42.9994	50.8671	48.8607	49.0263	29.7657	30.178	36.5185	47.6245	23.6433	17.0038	50.5252	52.1285	30.266	38.8259	111.397	103.058	36.6377	39.7513	28.1977	29.7048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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