TCONS_00040586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040586
Unique NameTCONS_00040586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040586 ID=TCONS_00040586|Name=TCONS_00040586|organism=Clytia hemisphaerica|type=transcript|length=479bp
CTTTGATCAAATCTCTCTTATTCACTTCTCTTCGATCAATTTCACTTGTC
AGATCTTCATTGAATTTGGACTTCAGAGTAACAACTAAGGTATATCTCTT
ACCAAGCTGCTGTTTTGCCTTAACAAGCATCTGACCTGATGGATTGAACT
TCAAAGATTCTTGGTACTTCTGGGTTGCGTGTTTGAAGCTCTTCAGGTAA
TTCTCCTGATTCTCCTTCCACCTTAGCAGTTGTTCATCAGTTGCAAGTTG
CACATTCTTCTCCCAAGACATTTGCAACTCTTTCAAACAATGATCGGTTG
ATTCCACTTGAAATAGCATGGCCTCCTCCTCGAGGTCATTGGTCGTCTTT
TGCTGAATCGCTTGTAATTTGGCTGACTCGTCTTTCGTGATCTTCATCTC
GTCCTTGGCAGCTTTGATAGCATCCGTGATTTTGTCCACGAGTGTCTGGT
AATCCATGGCGTGATTATCGTTGTAAGTC
Run BLAST on NCBI

protein sequence of TCONS_00040586-protein

>TCONS_00040586-protein ID=TCONS_00040586-protein|Name=TCONS_00040586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
TYNDNHAMDYQTLVDKITDAIKAAKDEMKITKDESAKLQAIQQKTTNDLE
EEAMLFQVESTDHCLKELQMSWEKNVQLATDEQLLRWKENQENYLKSFKH
ATQKYQESLKFNPSGQMLVKAKQQLGKRYTLVVTLKSKFNEDLTSEIDRR
EVNKRDLIK
Run BLAST on NCBI

transcript from alignment at sc0002483:3307..3785

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040586 ID=TCONS_00040586|Name=TCONS_00040586|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at sc0002483:3307..3785 (Clytia hemisphaerica)
GACTTACAACGATAATCACGCCATGGATTACCAGACACTCGTGGACAAAA
TCACGGATGCTATCAAAGCTGCCAAGGACGAGATGAAGATCACGAAAGAC
GAGTCAGCCAAATTACAAGCGATTCAGCAAAAGACGACCAATGACCTCGA
GGAGGAGGCCATGCTATTTCAAGTGGAATCAACCGATCATTGTTTGAAAG
AGTTGCAAATGTCTTGGGAGAAGAATGTGCAACTTGCAACTGATGAACAA
CTGCTAAGGTGGAAGGAGAATCAGGAGAATTACCTGAAGAGCTTCAAACA
CGCAACCCAGAAGTACCAAGAATCTTTGAAGTTCAATCCATCAGGTCAGA
TGCTTGTTAAGGCAAAACAGCAGCTTGGTAAGAGATATACCTTAGTTGTT
ACTCTGAAGTCCAAATTCAATGAAGATCTGACAAGTGAAATTGATCGAAG
AGAAGTGAATAAGAGAGATTTGATCAAAG

Coding sequence (CDS) from alignment at sc0002483:3307..3785

>TCONS_00040586 ID=TCONS_00040586|Name=TCONS_00040586|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0002483:3307..3785 (Clytia hemisphaerica)
ACTTACAACGATAATCACGCCATGGATTACCAGACACTCGTGGACAAAAT
CACGGATGCTATCAAAGCTGCCAAGGACGAGATGAAGATCACGAAAGACG
AGTCAGCCAAATTACAAGCGATTCAGCAAAAGACGACCAATGACCTCGAG
GAGGAGGCCATGCTATTTCAAGTGGAATCAACCGATCATTGTTTGAAAGA
GTTGCAAATGTCTTGGGAGAAGAATGTGCAACTTGCAACTGATGAACAAC
TGCTAAGGTGGAAGGAGAATCAGGAGAATTACCTGAAGAGCTTCAAACAC
GCAACCCAGAAGTACCAAGAATCTTTGAAGTTCAATCCATCAGGTCAGAT
GCTTGTTAAGGCAAAACAGCAGCTTGGTAAGAGATATACCTTAGTTGTTA
CTCTGAAGTCCAAATTCAATGAAGATCTGACAAGTGAAATTGATCGAAGA
GAAGTGAATAAGAGAGATTTGATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024704XLOC_024704Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040586-proteinTCONS_00040586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040586-exon-sc0002483-1491911889:3307..3785TCONS_00040586-exon-sc0002483-1491911889:3307..3785Clytia hemisphaericaexon
TCONS_00040586-exon-sc0002483-1510915933:3307..3785TCONS_00040586-exon-sc0002483-1510915933:3307..3785Clytia hemisphaericaexon
TCONS_00040586-exon-sc0002483-1575043694:3307..3785TCONS_00040586-exon-sc0002483-1575043694:3307..3785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002483supercontigsc0002483:3307..3785 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79893	0.640585	1.2134	0.895168	6.2343	5.10865	1.05163	1.89921	0.452759	0.279106	1.31352	1.01026	2.35692	0.773493	0	0	0	0.326382	0	0	0.00780224	0	0.357707	0	1.9315	0.350133	0	0	0.491005	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top