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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040581 ID=TCONS_00040581|Name=TCONS_00040581|organism=Clytia hemisphaerica|type=transcript|length=460bp
TTTTACCTGCCACACAAGAGAGCTGCCTTGCAGAAGTGCGTGTTGgatga
tcaaaaatattttcaagtgaCTTCAATAACGAAGTAATGCGCTTCTCCGA
AATAGAGACACTGGTGTTTCCAATGGCCGGTCTCTCCACACACGAAACAA
GCGTTGAGTGGTACTGGATACCTTCGTGGTTGCAAAAACGGTTGGAGATG
GTTGGTTGCTGTGCCTTCTCCACTGGCACCTTGCCATAGAAAGGGCCGTT
GGTGTAGAGGTATAAACGCTTGCTGCTGTTGTGGAACCACGTGTTGTATT
GGAAGCTGTGGTCTAGACTGATAATTCTGTACTGCATGGTTATACTGGGG
GGGACATGAATTTCTTGTTTGGGACCACATTGTTGGAAGGGTCCTGTTGG
TGCTTTCGTTTCAAACTCGAGATGGCTCTACCCTCAGCTTTCCTCCACCT
ATCATCATGT Run BLAST on NCBI transcript from alignment at sc0002480:9301..10757- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040581 ID=TCONS_00040581|Name=TCONS_00040581|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at sc0002480:9301..10757- (Clytia hemisphaerica)
TTTTACCTGCCACACAAGAGAGCTGCCTTGCAGAAGTGCGTGTTGGATGA
TCAAAAATATTTTCAAGTGACTTCAATAACGAAGTAATGCGCTTCTCCGA
AATAGAGTAAGTTTTGTTTTCGAAATCTACTTGAATGCCCAACCATTGAA
TTTTTGTGACTGGATCCCATCGGGACTTCTCCTCATTGATTACAAAACCT
GATTGATCTAAGGAATCTTTAACGAAAAGTGAATTNTCATTGATTACAAA
ACCTGATTGATCTAAGGAATCTTTAACAAAAAGTGAATTTTCTTTAGCTT
TTTCCCTCGAATATTCTACTGACAAACCATCGTCTAAAAAACAGGCTATC
CTTATCCCGTGAGATCTCCAAAATTTTATTAGAACCCTTACTATCTTAGT
AAAAATTAGAGGCCCCGAGCTCAGNATCGTCTAAAAAACAGGCTATCCTT
ATCCCGTGAGATCTCCAAAATTTTATTAGAACCCTTACTATCTTAGTAAA
AATTAGAGGCCCCGAACTCAAACCAAAAGGCAAAACAGAATACAAAAAAT
ATCTCTTTGGACCTTTCCCAAAATTCCAAGAAAAACCTAAATACTTTTGG
TGGTCGCTGTGTATGTCAACATGATGATACCCACTTTTTAAATCAAACTT
GAATAAATACGCCTCTTCATCTGAATGGATAAAACCTTCGAATACTTTCC
AATCGTCGAACTTTATCTTTTCTTTCCACAAAAATTGATTTAAGAAACTT
ACATCTAATATCAATCTTTTCTTCCCACTTGGATCCTCCGCTACTGATAA
AGGGTTGGTGGCAAACGGCCTCTGGACTTCGAAAATCTTTCTCTCTCTTA
ACAAGCCTTCTAGGGTCTCTTCAACAAACTTTTTGTTTCGTAAAGCTGAT
TTGTTATTCTTAAGCTCAAAAGGTGGTGGATTATACCTAAAGGGAATTCT
GTAACCGTGCTCGATAACCTTCAAAATGTGTAAATTGGCTTCTAAATTTT
TTCTCCAGAATTGAAGGTGCCTTTTTAAACTTCCTTTTACCCTTTGTTTA
TTTAGAGAAATACAATTATCACTCTTACCATTATCCCATTGTTTATCTTT
TAGGACACTGGTGTTTCCAATGGCCGGTCTCTCCACACACGAAACAAGCG
TTGAGTGGTACTGGATACCTTCGTGGTTGCAAAAACGGTTGGAGATGGTT
GGTTGCTGTGCCTTCTCCACTGGCACCTTGCCATAGAAAGGGCCGTTGGT
GTAGAGGTATAAACGCTTGCTGCTGTTGTGGAACCACGTGTTGTATTGGA
AGCTGTGGTCTAGACTGATAATTCTGTACTGCATGGTTATACTGGGGGGG
ACATGAATTTCTTGTTTGGGACCACATTGTTGGAAGGGTCCTGTTGGTGC
TTTCGTTTCAAACTCGAGATGGCTCTACCCTCAGCTTTCCTCCACCTATC
ATCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040581-exon-sc0002480-1575043694:10652..10757 | TCONS_00040581-exon-sc0002480-1575043694:10652..10757 | Clytia hemisphaerica | exon |
| TCONS_00040581-exon-sc0002480-1575043694:9301..9654 | TCONS_00040581-exon-sc0002480-1575043694:9301..9654 | Clytia hemisphaerica | exon |
| TCONS_00040581-exon-sc0002480-1510915933:10652..10757 | TCONS_00040581-exon-sc0002480-1510915933:10652..10757 | Clytia hemisphaerica | exon |
| TCONS_00040581-exon-sc0002480-1510915933:9301..9654 | TCONS_00040581-exon-sc0002480-1510915933:9301..9654 | Clytia hemisphaerica | exon |
| TCONS_00040581-exon-sc0002480-1491911889:10652..10757 | TCONS_00040581-exon-sc0002480-1491911889:10652..10757 | Clytia hemisphaerica | exon |
| TCONS_00040581-exon-sc0002480-1491911889:9301..9654 | TCONS_00040581-exon-sc0002480-1491911889:9301..9654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002480 | supercontig | sc0002480:9301..10757 - |
Blast
The following BLAST results are available for this feature:
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