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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040577 ID=TCONS_00040577|Name=TCONS_00040577|organism=Clytia hemisphaerica|type=transcript|length=1781bp
cgaaaaatgtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGA
ACCTATTGATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAA
TTACTGATACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAG
TTTAAAAAATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGC
CACAGCTGACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCG
ATTCACAGAATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatca
aatcaatataCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGT
GAAAGATATTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTC
ATTGGTTTACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTC
AATCGTACCACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTG
GATCACAAAAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCG
ACCAGAACCTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAAC
TGTTTAGTCGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagac
attttttcaacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATA
AAGTTAAAGCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAG
GATTCAAATATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGA
GGAAGTTGAGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAA
CTTTGAAAGACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgtt
gaaaacaagaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAG
AAAATTGGTGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGC
TTTTAAAAGCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAG
ACATTGGGGGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTG
TGTCCAACAAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTA
TGACTGATATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATG
ATCATCAACCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGT
ATTACGCATTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACA
CCAACTGGGTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCAC
GATAACTTGATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGA
TGATCCAAAGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCA
AAAGCATTTTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCA
TCTCTAAAAAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAA
AATGCTCCAAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTG
TTGTTGAAGAATTTGGTCCAGAATCAACAGAGTCACTTGAATCAATCATT
AGAAGAACCAATGCGAAAGCTATCTTTTTGGACGAATGGAGTGTAAATAG
TGAAACACTCGAAAGAATATTAACGTTATGCGATTTGGTTTGGATTGCAC
AGGAGGCTGAAGAATACAATCACAATAAATC Run BLAST on NCBI transcript from alignment at sc0002479:12489..14894+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040577 ID=TCONS_00040577|Name=TCONS_00040577|organism=Clytia hemisphaerica|type=transcript|length=2406bp|location=Sequence derived from alignment at sc0002479:12489..14894+ (Clytia hemisphaerica)
cgaaaaatgtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGA
ACCTATTGATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAA
TTACTGATACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAG
TTTAAAAAATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGC
CACAGCTGACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCG
ATTCACAGAATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatca
aatcaatataCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGT
GAAAGATATTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTC
ATTGGTTTACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTC
AATCGTACCACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTG
GATCACAAAAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCG
ACCAGAACCTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAAC
TGTTTAGTCGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagac
attttttcaacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATA
AAGTTAAAGCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAG
GATTCAAATATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGA
GGAAGTTGAGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAA
CTTTGAAAGACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgtt
gaaaacaagaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAG
AAAATTGGTGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGC
TTTTAAAAGCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAG
ACATTGGGGGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTG
TGTCCAACAAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTA
TGACTGATATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATG
ATCATCAACCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGT
ATTACGCATTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACA
CCAACTGGGTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCAC
GATAACTTGATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGA
TGATCCAAAGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCA
AAAGCATTTTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCA
TCTCTAAAAAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAA
AATGCTCCAAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTG
TTGTTGAAGAATTTGGTCCAGAATCAACAGTAagatttatttctttaaaa
aaattgaaattcacagTTTCTATTAACGGTCATGGTCACATGTACTAAGA
TGTTTCCTGTCTAACGTAGGACTAGCACTGGCATGAAAATGAAAGCTATA
GATTTAGTAGATAAAagcttattttttcaatacacctttcccgtaattcg
taaaactaatgcgcgcgcattattttgatgctctccaccgtttggtctct
ggatgtaaacaaacccgtttttgcctgcgttcccttagggaaagttattt
tttttagcttttcttaagttctgtcgaacaaagtcccctcaaattttagt
atgttcaatctattcatgatattataccatcctaaaaatattttgccaaa
agaaggttgctgtcaaaagttagaggctcaaatcccactttccctaaccc
ctcgcaggcaaaaacgagttttttacctcccaaacaattttatacacaac
ggtggagcgcacattttcccgggccatttctgagaaatttgaattacggg
aaaggtgtattagtcATTAAATTTGATTCGACTATCAAATATGTTATAAT
CATACTTAAGTTGAATATATTAAGAAGtcattaatttattttattcttcT
CTAGGAGTCACTTGAATCAATCATTAGAAGAACCAATGCGAAAGCTATCT
TTTTGGACGAATGGAGTGTAAATAGTGAAACACTCGAAAGAATATTAACG
TTATGCGATTTGGTTTGGATTGCACAGGAGGCTGAAGAATACAATCACAA
TAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040577-exon-sc0002479-1491911889:12489..14117 | TCONS_00040577-exon-sc0002479-1491911889:12489..14117 | Clytia hemisphaerica | exon |
| TCONS_00040577-exon-sc0002479-1510915933:12489..14117 | TCONS_00040577-exon-sc0002479-1510915933:12489..14117 | Clytia hemisphaerica | exon |
| TCONS_00040577-exon-sc0002479-1575043694:12489..14117 | TCONS_00040577-exon-sc0002479-1575043694:12489..14117 | Clytia hemisphaerica | exon |
| TCONS_00040577-exon-sc0002479-1491911889:14743..14894 | TCONS_00040577-exon-sc0002479-1491911889:14743..14894 | Clytia hemisphaerica | exon |
| TCONS_00040577-exon-sc0002479-1510915933:14743..14894 | TCONS_00040577-exon-sc0002479-1510915933:14743..14894 | Clytia hemisphaerica | exon |
| TCONS_00040577-exon-sc0002479-1575043694:14743..14894 | TCONS_00040577-exon-sc0002479-1575043694:14743..14894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002479 | supercontig | sc0002479:12489..14894 + |
Blast
The following BLAST results are available for this feature:
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