TCONS_00040576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040576
Unique NameTCONS_00040576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040576 ID=TCONS_00040576|Name=TCONS_00040576|organism=Clytia hemisphaerica|type=transcript|length=540bp
GGATTCAGAGATGGTCTGATACGTAATGAAATGTCGTATATGTCGAGGGT
ATAGCATCCCAATTAGAATATCAGGGTAAACACCATTCCATCTTTGTCTA
TCATGTAAGAAAAAACCGATGTCAGTTTTCTTGAGAGATTTCGCCTGGCC
ATCAATAATCATGTTGAAGCCAAATCTTTCTTCGGatgatatatttttga
aaatgtgtcgtaaataatgataaaaatacGATTCACGAATTGTACCGATG
TCCATAAATTCGATGCTCTTGTTCGTTTCTGTTTCAATGGGTGTGAGCTC
AGTCAAGGCGTATGTCAGCAAGTTCTTCTCCAGATCTGAAAGAACAAAAC
AACACCATTTCAATTTGAGACAATAGGAATAAAAAATAGTCTTATCCcat
tattctttttaaagtaaaatctttGAAGGCAATGGTTTCAAAGAGATCCC
AGATTTGATTGAAATCTAATGATCTCAATGTACAGCGGAGTCTATATTTC
ATACATCTACAACTCGTTCGTTAAACTCAAACGATCTTTC
Run BLAST on NCBI

transcript from alignment at sc0002478:21881..22420

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040576 ID=TCONS_00040576|Name=TCONS_00040576|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at sc0002478:21881..22420 (Clytia hemisphaerica)
GAAAGATCGTTTGAGTTTAACGAACGAGTTGTAGATGTATGAAATATAGA
CTCCGCTGTACATTGAGATCATTAGATTTCAATCAAATCTGGGATCTCTT
TGAAACCATTGCCTTCaaagattttactttaaaaagaataatgGGATAAG
ACTATTTTTTATTCCTATTGTCTCAAATTGAAATGGTGTTGTTTTGTTCT
TTCAGATCTGGAGAAGAACTTGCTGACATACGCCTTGACTGAGCTCACAC
CCATTGAAACAGAAACGAACAAGAGCATCGAATTTATGGACATCGGTACA
ATTCGTGAATCgtatttttatcattatttacgacacattttcaaaaatat
atcatCCGAAGAAAGATTTGGCTTCAACATGATTATTGATGGCCAGGCGA
AATCTCTCAAGAAAACTGACATCGGTTTTTTCTTACATGATAGACAAAGA
TGGAATGGTGTTTACCCTGATATTCTAATTGGGATGCTATACCCTCGACA
TATACGACATTTCATTACGTATCAGACCATCTCTGAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024695XLOC_024695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040576-exon-sc0002478-1491911889:21881..22420TCONS_00040576-exon-sc0002478-1491911889:21881..22420Clytia hemisphaericaexon
TCONS_00040576-exon-sc0002478-1510915933:21881..22420TCONS_00040576-exon-sc0002478-1510915933:21881..22420Clytia hemisphaericaexon
TCONS_00040576-exon-sc0002478-1575043694:21881..22420TCONS_00040576-exon-sc0002478-1575043694:21881..22420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002478supercontigsc0002478:21881..22420 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13636	0.438894	0.684426	0.267957	0.439719	0.539853	8.33173	11.3793	3.54589	2.34951	1.837	2.56954	2.4614	1.78621	3.76044	6.6668	1.87368	3.80126	0.741792	0.587147	4.74652	5.08124	2.25564	2.52566	10.5478	12.485	0.14697	0	2.8189	3.40046
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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