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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040570 ID=TCONS_00040570|Name=TCONS_00040570|organism=Clytia hemisphaerica|type=transcript|length=1907bp
tcccacattttcaggttggattttccattggattttatcttttttccaac
taagaaaacttgaaatttccaaccttggaaatcgaaaatttgttCCTGTG
NAAAACAAAACTGAAAGAGGGTGGATTCaacttgagaaaatttaaatCCA
ACTCCAAAAATCTAGAAAGTTGGATAGTGAAAGACTTTGGATCGAATGAA
TTAGAAAAGGGAGAACAAACGAAGGTACTCGGAGTTTCGTGGAACAAAGC
AGAtgataaactttgttttgatttcgatgAACTTTTACAAAATCAAATTG
AGCCATTAACGAAACGAAATGTTATGCATTTTATCGCTTCAATTTACGAC
CCTCTCGGGCTGATAAACCCAGTCGTGGTAACAATGAAATGCTTCTTGAA
GGAACTGTTTAAAGAGAAGCTTGGTTGGGACGACCCCCTACCCGAAACCT
TGAAGAGTAGATGGATTTCTATTTTGAAGGGCCTTGAGAActgtaaaatt
gaaattgacaGACTGTACTCTTTGAAAGAATTTGAAGACCCATTCGTTAA
CGTACAATTACACGGGTTTTCTGATGCATCAAAAGTCGCTTTTGGTGCAA
GTATGTATTTGAGATTCGTTTACAACTCTGGAAAAATCAAAGTTGTTTTG
ATTGCAGGAAAATCTAGAGTCAAACCAAACAAAGTGAAAAGTATTCCCCG
CTTAGAACTTTTGGGAACTTTATTGATTTCACGTTTAGCTCAAACAGTTA
GAGAAGAATTGAGCTCTGTTTTTACGCTTGATGATCGCACACATTTATGG
ACAGACTCTTCGTGTGCTTATTGTTGGATCATCAATGAAGACAAAACTTT
TAAACGTTTCGTAGAAAATCGGGTTTGTAAAATCCGCAAATTGACTGAGT
CTGCATGTTGGCACCTAGTGCCTTCAAAGTCAAATCCTGCAGACATAATC
TCCAAGGGAAGTTCACCAGGAGAACTTGGAGATTTGTGGTTTCGAGGACC
AAAATTTCTGGCTTTGCCGGAAACCTCTTGGCCACAACTTTTACCTGGTG
ACAAGTTTGATGAATACAAAGAAGAAGTTAAGCCGGTGATTGCTTTGTCA
GCACCNCAACCAGAATGGACCGTGGCTATCCGCCAAAGAACTGACGGATA
CCAGAAAGTTATGGATTAAACACGAACAGTTATCCATCAAAAATTTGAAC
GACGTCGGAAGAAACTTAGGAAATTACTTAGACGATGACGGCTTGATACG
ATGTCGTGGACGATTAGACAACGCAAATCTTACGTTCAACGAGAAGTACC
CTTATTTATTGCCTAGCAGTCGGCTAGCCCAAATGATTGTTTATGATGTC
CACAACAGAATCCAACACGCCGGTGTTAGAGACACTTTAGTTGAATTACG
TCAAGAATTCTGGATAcctaaaggaagaaatttcgtACGAAAAGCACTAT
TTGACTGTAATACGTGCAAACGAGTAAATGCTAAACCATACGCTTATCCA
GAACCACCTTCACTTCCGGTAGATCGAGTAACCGGAACGACAGCCTTCAA
AAACGTTGGTCTTGATTACGCAGGACCTCTTCATGTTAAGAACGTTTTCG
GAGATGATGAGGAATTATACAAAGCTTGGATCTCGGTTGCTACCTGTACC
AGTAGCCGAGGAGTTCACCTCGACATTGCAGCAGACGCTTCGGCTGATGA
ATGTGTGGAGATTTTACGACGTTTGATTGCACGACACGGTGCACCCGACA
TAGTACGTTCTGACAATGGGACTAATTTTGTCAGTGAAACTGTACAGAAC
TTTGCATCATCTCGAAATATAGACTGCTCCACGGGATTGGAGGTCAAAAt
ccttgcaacgttacaaatcattttcagaagctcgttttgggctcaaacga
agcgtaa Run BLAST on NCBI protein sequence of TCONS_00040570-protein >TCONS_00040570-protein ID=TCONS_00040570-protein|Name=TCONS_00040570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MHFIASIYDPLGLINPVVVTMKCFLKELFKEKLGWDDPLPETLKSRWISI
LKGLENCKIEIDRLYSLKEFEDPFVNVQLHGFSDASKVAFGASMYLRFVY
NSGKIKVVLIAGKSRVKPNKVKSIPRLELLGTLLISRLAQTVREELSSVF
TLDDRTHLWTDSSCAYCWIINEDKTFKRFVENRVCKIRKLTESACWHLVP
SKSNPADIISKGSSPGELGDLWFRGPKFLALPETSWPQLLPGDKFDEYKE
EVKPVIALSAXQPEWTVAIRQRTDGYQKVMD Run BLAST on NCBI transcript from alignment at sc0002477:20818..22724 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040570 ID=TCONS_00040570|Name=TCONS_00040570|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at sc0002477:20818..22724 (Clytia hemisphaerica)
ttacgcttcgtttgagcccaaaacgagcttctgaaaatgatttgtaacgt
tgcaaggaTTTTGACCTCCAATCCCGTGGAGCAGTCTATATTTCGAGATG
ATGCAAAGTTCTGTACAGTTTCACTGACAAAATTAGTCCCATTGTCAGAA
CGTACTATGTCGGGTGCACCGTGTCGTGCAATCAAACGTCGTAAAATCTC
CACACATTCATCAGCCGAAGCGTCTGCTGCAATGTCGAGGTGAACTCCTC
GGCTACTGGTACAGGTAGCAACCGAGATCCAAGCTTTGTATAATTCCTCA
TCATCTCCGAAAACGTTCTTAACATGAAGAGGTCCTGCGTAATCAAGACC
AACGTTTTTGAAGGCTGTCGTTCCGGTTACTCGATCTACCGGAAGTGAAG
GTGGTTCTGGATAAGCGTATGGTTTAGCATTTACTCGTTTGCACGTATTA
CAGTCAAATAGTGCTTTTCGTacgaaatttcttcctttaggTATCCAGAA
TTCTTGACGTAATTCAACTAAAGTGTCTCTAACACCGGCGTGTTGGATTC
TGTTGTGGACATCATAAACAATCATTTGGGCTAGCCGACTGCTAGGCAAT
AAATAAGGGTACTTCTCGTTGAACGTAAGATTTGCGTTGTCTAATCGTCC
ACGACATCGTATCAAGCCGTCATCGTCTAAGTAATTTCCTAAGTTTCTTC
CGACGTCGTTCAAATTTTTGATGGATAACTGTTCGTGTTTAATCCATAAC
TTTCTGGTATCCGTCAGTTCTTTGGCGGATAGCCACGGTCCATTCTGGTT
GNGGTGCTGACAAAGCAATCACCGGCTTAACTTCTTCTTTGTATTCATCA
AACTTGTCACCAGGTAAAAGTTGTGGCCAAGAGGTTTCCGGCAAAGCCAG
AAATTTTGGTCCTCGAAACCACAAATCTCCAAGTTCTCCTGGTGAACTTC
CCTTGGAGATTATGTCTGCAGGATTTGACTTTGAAGGCACTAGGTGCCAA
CATGCAGACTCAGTCAATTTGCGGATTTTACAAACCCGATTTTCTACGAA
ACGTTTAAAAGTTTTGTCTTCATTGATGATCCAACAATAAGCACACGAAG
AGTCTGTCCATAAATGTGTGCGATCATCAAGCGTAAAAACAGAGCTCAAT
TCTTCTCTAACTGTTTGAGCTAAACGTGAAATCAATAAAGTTCCCAAAAG
TTCTAAGCGGGGAATACTTTTCACTTTGTTTGGTTTGACTCTAGATTTTC
CTGCAATCAAAACAACTTTGATTTTTCCAGAGTTGTAAACGAATCTCAAA
TACATACTTGCACCAAAAGCGACTTTTGATGCATCAGAAAACCCGTGTAA
TTGTACGTTAACGAATGGGTCTTCAAATTCTTTCAAAGAGTACAGTCtgt
caatttcaattttacagTTCTCAAGGCCCTTCAAAATAGAAATCCATCTA
CTCTTCAAGGTTTCGGGTAGGGGGTCGTCCCAACCAAGCTTCTCTTTAAA
CAGTTCCTTCAAGAAGCATTTCATTGTTACCACGACTGGGTTTATCAGCC
CGAGAGGGTCGTAAATTGAAGCGATAAAATGCATAACATTTCGTTTCGTT
AATGGCTCAATTTGATTTTGTAAAAGTTcatcgaaatcaaaacaaagttt
atcaTCTGCTTTGTTCCACGAAACTCCGAGTACCTTCGTTTGTTCTCCCT
TTTCTAATTCATTCGATCCAAAGTCTTTCACTATCCAACTTTCTAGATTT
TTGGAGTTGGatttaaattttctcaagttGAATCCACCCTCTTTCAGTTT
TGTTTTNCACAGGaacaaattttcgatttccaaggttggaaatttcaagt
tttcttagttggaaaaaagataaaatccaatggaaaatccaacctgaaaa
tgtggga Coding sequence (CDS) from alignment at sc0002477:20818..22724 >TCONS_00040570 ID=TCONS_00040570|Name=TCONS_00040570|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0002477:20818..22724 (Clytia hemisphaerica)
TTAATCCATAACTTTCTGGTATCCGTCAGTTCTTTGGCGGATAGCCACGG
TCCATTCTGGTTGNGGTGCTGACAAAGCAATCACCGGCTTAACTTCTTCT
TTGTATTCATCAAACTTGTCACCAGGTAAAAGTTGTGGCCAAGAGGTTTC
CGGCAAAGCCAGAAATTTTGGTCCTCGAAACCACAAATCTCCAAGTTCTC
CTGGTGAACTTCCCTTGGAGATTATGTCTGCAGGATTTGACTTTGAAGGC
ACTAGGTGCCAACATGCAGACTCAGTCAATTTGCGGATTTTACAAACCCG
ATTTTCTACGAAACGTTTAAAAGTTTTGTCTTCATTGATGATCCAACAAT
AAGCACACGAAGAGTCTGTCCATAAATGTGTGCGATCATCAAGCGTAAAA
ACAGAGCTCAATTCTTCTCTAACTGTTTGAGCTAAACGTGAAATCAATAA
AGTTCCCAAAAGTTCTAAGCGGGGAATACTTTTCACTTTGTTTGGTTTGA
CTCTAGATTTTCCTGCAATCAAAACAACTTTGATTTTTCCAGAGTTGTAA
ACGAATCTCAAATACATACTTGCACCAAAAGCGACTTTTGATGCATCAGA
AAACCCGTGTAATTGTACGTTAACGAATGGGTCTTCAAATTCTTTCAAAG
AGTACAGTCtgtcaatttcaattttacagTTCTCAAGGCCCTTCAAAATA
GAAATCCATCTACTCTTCAAGGTTTCGGGTAGGGGGTCGTCCCAACCAAG
CTTCTCTTTAAACAGTTCCTTCAAGAAGCATTTCATTGTTACCACGACTG
GGTTTATCAGCCCGAGAGGGTCGTAAATTGAAGCGATAAAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040570-exon-sc0002477-1491911889:20818..22724 | TCONS_00040570-exon-sc0002477-1491911889:20818..22724 | Clytia hemisphaerica | exon |
| TCONS_00040570-exon-sc0002477-1510915933:20818..22724 | TCONS_00040570-exon-sc0002477-1510915933:20818..22724 | Clytia hemisphaerica | exon |
| TCONS_00040570-exon-sc0002477-1575043694:20818..22724 | TCONS_00040570-exon-sc0002477-1575043694:20818..22724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002477 | supercontig | sc0002477:20818..22724 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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