TCONS_00040568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040568
Unique NameTCONS_00040568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040568 ID=TCONS_00040568|Name=TCONS_00040568|organism=Clytia hemisphaerica|type=transcript|length=640bp
cgggaaccaaacTATTTTTTACTAACGGCCCTATTGAATATAACCAATTA
CTACAGACTGTCACGTTCGCCTAAAGCTCCCCATAATTAGtgacaaaaat
attacaatAAATTAACGACATGATAACCTGGTGCCTTACAACAACAGAAC
TTTTCTGGCACTTATTCGGGATCCTTCCGCTGCTTTTATCTGATAAACTG
GCAAAGATAGTTGTTCAGCTGTGTATTAATGCCTAGACTAGACAATGGTG
TGTTGCCTTGGAAATGACCGCCTAACTAATTATTTTGATTGAGTACGTAC
TTCAACTTTTTaccaaaacttggaaaaaactgTTTTCTGGTCTACTTTTC
TTACCTCATCAAGTCGCACAAATCAAGTTGCATATAAATGAAAGGCTTTT
ATAATATGATAATCACAGTTAGGAGCTATCTTCCTAAGTTTGGGCAAATG
AAATTTGGATTAAAACTGCAAGCCATCAGACAGAAGGAAAGTTTTGAAGA
GGTTTATCTTTCGAATTAACTGACGTCAGCATTGTGCAGGGTGATTGTTT
TTGCTGAattgtgctgacgtcagcaaagtttgaaaaaatatttttgtcga
gtttttttcttttgatattttgcaaCTTTGCTTCAAAGCT
Run BLAST on NCBI

transcript from alignment at sc0002475:1885..2524

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040568 ID=TCONS_00040568|Name=TCONS_00040568|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0002475:1885..2524 (Clytia hemisphaerica)
AGCTTTGAAGCAAAGttgcaaaatatcaaaagaaaaaaactcgacaaaaa
tattttttcaaactttgctgacgtcagcacaatTCAGCAAAAACAATCAC
CCTGCACAATGCTGACGTCAGTTAATTCGAAAGATAAACCTCTTCAAAAC
TTTCCTTCTGTCTGATGGCTTGCAGTTTTAATCCAAATTTCATTTGCCCA
AACTTAGGAAGATAGCTCCTAACTGTGATTATCATATTATAAAAGCCTTT
CATTTATATGCAACTTGATTTGTGCGACTTGATGAGGTAAGAAAAGTAGA
CCAGAAAAcagttttttccaagttttggtAAAAAGTTGAAGTACGTACTC
AATCAAAATAATTAGTTAGGCGGTCATTTCCAAGGCAACACACCATTGTC
TAGTCTAGGCATTAATACACAGCTGAACAACTATCTTTGCCAGTTTATCA
GATAAAAGCAGCGGAAGGATCCCGAATAAGTGCCAGAAAAGTTCTGTTGT
TGTAAGGCACCAGGTTATCATGTCGTTAATTTattgtaatatttttgtca
CTAATTATGGGGAGCTTTAGGCGAACGTGACAGTCTGTAGTAATTGGTTA
TATTCAATAGGGCCGTTAGTAAAAAATAgtttggttcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024691XLOC_024691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040568-exon-sc0002475-1491911889:1885..2524TCONS_00040568-exon-sc0002475-1491911889:1885..2524Clytia hemisphaericaexon
TCONS_00040568-exon-sc0002475-1510915933:1885..2524TCONS_00040568-exon-sc0002475-1510915933:1885..2524Clytia hemisphaericaexon
TCONS_00040568-exon-sc0002475-1575043694:1885..2524TCONS_00040568-exon-sc0002475-1575043694:1885..2524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002475supercontigsc0002475:1885..2524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163328	0.289925	0.612877	1.23711	0.523589	0.354572	0.626391	0.452766	0.592328	0.0437218	0.177738	0.21723	0.312485	0.262993	0.217661	0.326231	0.480631	0.0722785	0	0	0.586342	0.593048	0.21472	0.411201	1.15903	2.43277	0	1.28807	0.0270204	0.152908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top