TCONS_00040565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040565
Unique NameTCONS_00040565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040565 ID=TCONS_00040565|Name=TCONS_00040565|organism=Clytia hemisphaerica|type=transcript|length=1583bp
TGCAACTGTTATAAGTCCAGAACTGATGGAATCAATATTATTTGTTCTGT
TCTACTATCATAACAGCAAGATCGATGGGAAGCCGCATACATGTAATGTT
TCAATTATCCCTGTATTTCCTCCTGAACATATTGATTTTGACAAAAAGGA
TCCAGTATGTCAGATTGAAGATTCTATGCTGAACTCTGTGAAACAGATAA
ACAAACCATCACAACTGAATCAAAAGAATGAACAAGAGAAAGTAGTTATC
GAAAAAGCACTTGATCAAATTAAAGTTATTGTGAAAACACTGGTTGCGGT
CGAGCAAATGATAAAGCTAAGACATGTCAATCCAGAGTTCTTATTCAGAA
GAGCAAATGCATCCTCATCACTTTGCACTGTCGGCCAACACACACAATTA
GAATTCAACCTCAGTGCATTTGGTCTCCAACAAGATCCAATGGAGGGGCT
CAACTTTATAAAGATGATCATTGTTCACTTGTATCAAAGTGTGAGTTTTG
AAACTGATTGCCCTTTGGTTCAATACTTCAAAAGCATTGGTTTGACTGGC
TTGGTTGATGAAGACTCATCGTGTATAAGTTCAAATACATGCTTGAATTT
GGATGTGGCAGACCACAATGAAATGAATGAAGACAAGCAATTTCAAATCC
TCAACTTGTGCAGTAACTTACTCAAAATACCTATCATTGTTATTCAACCG
TTTTATCGACTATCTGTATTTACCATTCTCCCTGAACATCAATTAACAGA
CAAACCAATCATTTTGTCTTATGATTCAGAGAACAGACGCATTATGGGAA
CAAAACCACTTAAAAAGATAGAAAATTTGACTTCGGAATCGGAACTTCAC
GtTCCTTGTCACTGTAAAAAAGGCTGCACAGAGAGTACAAGCAAGAGGAA
ATGCCCTTGTGTATGCAGTGGCAAAGAGTGCAGCATGCAATGCAAATGTC
GAAATTGTCGAAATAACAAGAAAGTAGTGCTGGATCCCTCAGGGTGCAAA
TGTGTTTCTGGATGTGTCAATGTTGAAGGAAAGCGGAAATCAAAATGTAA
ATGTTTGAAATTAGGGCTAAGTTGCATCAATTGCTCGTGCTTGAACTGTC
TTAACCCAGCTggtcaaaacaacaaaagaaaggaTTCTTCGTGTGAATCT
AAAAGTAGAGCCACGAACTCTCACACAACTTACAAAAAGAAAAGAACGGA
AGATTACGTTTCTTCTACACAGAATTCTGTGACTCTTGGTCAAGGACCCT
GGTCATTAAATGAGACGGTGTGTTTGTATGTCAGTTCTGAATTAACGCTT
CGAATTCATGGTTGTTATGAAGTTGAAGAAATACATAAAACTTATAACTT
TTTCTCAGGAGAAAAATTATCTACAGAAGACCTTATGCTGAAAGCTAAAA
CGATAAACCAAATCAAGGGTAAACTCAAAGTAATGGGATACCTCCTTGGC
TGAAGAAAGAACAGATGGTGTAACTTGCAGATATTCCTTTACTTACATTC
GGCTTCAAATCTATGATTAATATCCCTCATATCGTTTTGAAACTCTGGTT
GAGTCCAGTAGAATTTCATCAAAAATACGGTCA
Run BLAST on NCBI

protein sequence of TCONS_00040565-protein

>TCONS_00040565-protein ID=TCONS_00040565-protein|Name=TCONS_00040565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
ATVISPELMESILFVLFYYHNSKIDGKPHTCNVSIIPVFPPEHIDFDKKD
PVCQIEDSMLNSVKQINKPSQLNQKNEQEKVVIEKALDQIKVIVKTLVAV
EQMIKLRHVNPEFLFRRANASSSLCTVGQHTQLEFNLSAFGLQQDPMEGL
NFIKMIIVHLYQSVSFETDCPLVQYFKSIGLTGLVDEDSSCISSNTCLNL
DVADHNEMNEDKQFQILNLCSNLLKIPIIVIQPFYRLSVFTILPEHQLTD
KPIILSYDSENRRIMGTKPLKKIENLTSESELHVPCHCKKGCTESTSKRK
CPCVCSGKECSMQCKCRNCRNNKKVVLDPSGCKCVSGCVNVEGKRKSKCK
CLKLGLSCINCSCLNCLNPAGQNNKRKDSSCESKSRATNSHTTYKKKRTE
DYVSSTQNSVTLGQGPWSLNETVCLYVSSELTLRIHGCYEVEEIHKTYNF
FSGEKLSTEDLMLKAKTINQIKGKLKVMGYLLG
Run BLAST on NCBI

transcript from alignment at sc0002472:18237..20979-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040565 ID=TCONS_00040565|Name=TCONS_00040565|organism=Clytia hemisphaerica|type=transcript|length=2743bp|location=Sequence derived from alignment at sc0002472:18237..20979- (Clytia hemisphaerica)
TGCAACTGTTATAAGTCCAGAACTGATGGAATCAATATTATTTGTTCTGT
TCTACTATCATAACAGCAAGATCGATGGGAAGCCGCATACATGTAATGTT
TCAATTATCCCTGTATTTCCTCCTGAACATATTGATTTTGACAAAAAGGA
TCCAGTATGTCAGATTGAAGATTCTATGCTGAACTCTGTGAAACAGATAA
ACAAACCATCACAACTGAATCAAAAGAATGAACAAGAGAAAGTAGTTATC
GAAAAAGCACTTGATCAAATTAAAGTTATTGTGAAAACACTGGTTGCGGT
CGAGCAAATGATAAAGCTAAGACATGTCAATCCAGAGTTCTTATTCAGAA
GAGCAAATGCATCCTCATCACTTTGCACTGTCGGCCAACACACACAATTA
GAATTCAACCTCAGTGCATTTGGTCTCCAACAAGATCCAATGGAGGGGCT
CAACTTTATAAAGATGATCATTGTTCACTTGTATCAAAGTGTGAGTTTTG
AAACTGATTGCCCTTTGGTTCAATACTTCAAAAGCATTGGTTTGACTGGC
TTGGTTGATGAAGACTCATCGTGTATAAGGTAAGATTTCAAAAAGTATTA
AATAAAGGAATTTCAGATGTACCCAGTTAATTTTTTTTTCAATGAAAATC
TTTTTCAAAACTTGTTTATCAAAAAGTCAAGTTTACAGCATAAGGATCAG
ATCCTTATGCTGTAAACTTGACTTTTTGATGATTAAAGTTTTGAAGGAAG
AAGTATTATGAGATTTCAGTAACAGTCCCCAGGGCTCAAACCTGTACCTT
GACTCACCCTTGTATTTTTAAGGTGCGCATTAAACCAACTGAGCTAACCA
CCACAAAATAAGCATAACTGTTATAAGCATATTCAGGTTGAATTTGATAA
AATAATTAAGTAAATACTAAGCATATCTCCAGTGCAAACTTACAAGACCT
GTTTGAAAAGAGAACTGTTTCCTGTCATTAACAAGACATACCCAAGAAAT
GATTGGATGTTTACTATTCAGGATGGACATATCAGCAACATCGTTGAAAG
TAGAAACATTGAAACATTATATTTAATTTCAATTTTAACCATGAAATATT
GACGTCAATTCTATAAACAAGTAATTTTTCACTCATCTTAGGGAAAAGAC
CATATTTCTGAAACTACATTTGCAAACTTAATAAAACTTTCAGGAAAATT
TTGAAATGTGATAGTGATTATACCTGTAACTTTTCAAGTATATAGCATAA
GTAGAAAAATTTACTATCTACTATCTATATGTTTCAGTTCAAATACATGC
TTGAATTTGGATGTGGCAGACCACAATGAAATGAATGAAGACAAGCAATT
TCAAATCCTCAACTTGTGCAGTAACTTACTCAAAATACCTATCATTGTTA
TTCAACCGTTTTATCGACTATCTGTATTTACCATTCTCCCTGAACATCAA
TTAACAGACAAACCAATCATTTTGTCTTATGATTCAGAGAACAGACGCAT
TATGGGAACAAAACCACTTAAAAAGATAGAAAATTTGACTTCGGAATCGG
AACTTCACGGTAAGTTTACTTTGTTGATACATTTTCGTATTAAAATTGTG
CTCACTTATATTTTTTGGTCTTCAATAACCATTTGATTGAAATAGCCAGT
CAAAAAGTTTGTATCAACTAAAAGGTTTTTTAGGGTTTTCTCGAAATTGG
TTCATTTGTTTTCTTTGGATTTTTTGCACAAATATGGTTATCTGGATACC
CTAACTAACATATGATGGAACCTGATTCTTTTGGGGAAAAAATTTTCACT
GCCGATTATAGCCAAAAATGGCCCGAAAAATTGGATTATGTCAATAGATT
CTGAAAATATCCTCGAGATTTCATAATGAGTTGAACTACTTGTTCTTAGG
TTTGTTTAAGATTATTTTGAATTCTTACATGCCTGCTGTGGTTATCTTAG
CATATGATTTTCATCATGCATGTTGATTCAAAGTTGCTTATTTTATTTAT
CAATTTTTTAGTTCCTTGTCACTGTAAAAAAGGCTGCACAGAGAGTACAA
GCAAGAGGAAATGCCCTTGTGTATGCAGTGGCAAAGAGTGCAGCATGCAA
TGCAAATGTCGAAATTGTCGAAATAACAAGAAAGTAGTGCTGGATCCCTC
AGGGTGCAAATGTGTTTCTGGATGTGTCAATGTTGAAGGAAAGCGGAAAT
CAAAATGTAAATGTTTGAAATTAGGGCTAAGTTGCATCAATTGCTCGTGC
TTGAACTGTCTTAACCCAGCTGGTCAAAACAACAAAAGAAAGGATTCTTC
GTGTGAATCTAAAAGTAGAGCCACGAACTCTCACACAACTTACAAAAAGA
AAAGAACGGAAGATTACGTTTCTTCTACACAGAATTCTGTGACTCTTGGT
CAAGGACCCTGGTCATTAAATGAGACGGTGTGTTTGTATGTCAGTTCTGA
ATTAACGCTTCGAATTCATGGTTGTTATGAAGTTGAAGAAATACATAAAA
CTTATAACTTTTTCTCAGGAGAAAAATTATCTACAGAAGACCTTATGCTG
AAAGCTAAAACGATAAACCAAATCAAGGGTAAACTCAAAGTAATGGGATA
CCTCCTTGGCTGAAGAAAGAACAGATGGTGTAACTTGCAGATATTCCTTT
ACTTACATTCGGCTTCAAATCTATGATTAATATCCCTCATATCGTTTTGA
AACTCTGGTTGAGTCCAGTAGAATTTCATCAAAAATACGGTCA

Coding sequence (CDS) from alignment at sc0002472:18237..20979-

>TCONS_00040565 ID=TCONS_00040565|Name=TCONS_00040565|organism=Clytia hemisphaerica|type=CDS|length=4356bp|location=Sequence derived from alignment at sc0002472:18237..20979- (Clytia hemisphaerica)
TTCCTTGTCACTGTAAAAAAGGCTGCACAGAGAGTACAAGCAAGAGGAAA
TGCCCTTGTGTATGCAGTGGCAAAGAGTGCAGCATGCAATGCAAATGTCG
AAATTGTCGAAATAACAAGAAAGTAGTGCTGGATCCCTCAGGGTGCAAAT
GTGTTTCTGGATGTGTCAATGTTGAAGGAAAGCGGAAATCAAAATGTAAA
TGTTTGAAATTAGGGCTAAGTTGCATCAATTGCTCGTGCTTGAACTGTCT
TAACCCAGCTGGTCAAAACAACAAAAGAAAGGATTCTTCGTGTGAATCTA
AAAGTAGAGCCACGAACTCTCACACAACTTACAAAAAGAAAAGAACGGAA
GATTACGTTTCTTCTACACAGAATTCTGTGACTCTTGGTCAAGGACCCTG
GTCATTAAATGAGACGGTGTGTTTGTATGTCAGTTCTGAATTAACGCTTC
GAATTCATGGTTGTTATGAAGTTGAAGAAATACATAAAACTTATAACTTT
TTCTCAGGAGAAAAATTATCTACAGAAGACCTTATGCTGAAAGCTAAAAC
GATAAACCAAATCAAGGGTAAACTCAAAGTAATGGGATACCTCCTTGGCT
GATTCAAATACATGCTTGAATTTGGATGTGGCAGACCACAATGAAATGAA
TGAAGACAAGCAATTTCAAATCCTCAACTTGTGCAGTAACTTACTCAAAA
TACCTATCATTGTTATTCAACCGTTTTATCGACTATCTGTATTTACCATT
CTCCCTGAACATCAATTAACAGACAAACCAATCATTTTGTCTTATGATTC
AGAGAACAGACGCATTATGGGAACAAAACCACTTAAAAAGATAGAAAATT
TGACTTCGGAATCGGAACTTCACGGCAACTGTTATAAGTCCAGAACTGAT
GGAATCAATATTATTTGTTCTGTTCTACTATCATAACAGCAAGATCGATG
GGAAGCCGCATACATGTAATGTTTCAATTATCCCTGTATTTCCTCCTGAA
CATATTGATTTTGACAAAAAGGATCCAGTATGTCAGATTGAAGATTCTAT
GCTGAACTCTGTGAAACAGATAAACAAACCATCACAACTGAATCAAAAGA
ATGAACAAGAGAAAGTAGTTATCGAAAAAGCACTTGATCAAATTAAAGTT
ATTGTGAAAACACTGGTTGCGGTCGAGCAAATGATAAAGCTAAGACATGT
CAATCCAGAGTTCTTATTCAGAAGAGCAAATGCATCCTCATCACTTTGCA
CTGTCGGCCAACACACACAATTAGAATTCAACCTCAGTGCATTTGGTCTC
CAACAAGATCCAATGGAGGGGCTCAACTTTATAAAGATGATCATTGTTCA
CTTGTATCAAAGTGTGAGTTTTGAAACTGATTGCCCTTTGGTTCAATACT
TCAAAAGCATTGGTTTGACTGGCTTGGTTGATGAAGACTCATCGTGTATA
AGTTCCTTGTCACTGTAAAAAAGGCTGCACAGAGAGTACAAGCAAGAGGA
AATGCCCTTGTGTATGCAGTGGCAAAGAGTGCAGCATGCAATGCAAATGT
CGAAATTGTCGAAATAACAAGAAAGTAGTGCTGGATCCCTCAGGGTGCAA
ATGTGTTTCTGGATGTGTCAATGTTGAAGGAAAGCGGAAATCAAAATGTA
AATGTTTGAAATTAGGGCTAAGTTGCATCAATTGCTCGTGCTTGAACTGT
CTTAACCCAGCTGGTCAAAACAACAAAAGAAAGGATTCTTCGTGTGAATC
TAAAAGTAGAGCCACGAACTCTCACACAACTTACAAAAAGAAAAGAACGG
AAGATTACGTTTCTTCTACACAGAATTCTGTGACTCTTGGTCAAGGACCC
TGGTCATTAAATGAGACGGTGTGTTTGTATGTCAGTTCTGAATTAACGCT
TCGAATTCATGGTTGTTATGAAGTTGAAGAAATACATAAAACTTATAACT
TTTTCTCAGGAGAAAAATTATCTACAGAAGACCTTATGCTGAAAGCTAAA
ACGATAAACCAAATCAAGGGTAAACTCAAAGTAATGGGATACCTCCTTGG
CTGATTCAAATACATGCTTGAATTTGGATGTGGCAGACCACAATGAAATG
AATGAAGACAAGCAATTTCAAATCCTCAACTTGTGCAGTAACTTACTCAA
AATACCTATCATTGTTATTCAACCGTTTTATCGACTATCTGTATTTACCA
TTCTCCCTGAACATCAATTAACAGACAAACCAATCATTTTGTCTTATGAT
TCAGAGAACAGACGCATTATGGGAACAAAACCACTTAAAAAGATAGAAAA
TTTGACTTCGGAATCGGAACTTCACGGCAACTGTTATAAGTCCAGAACTG
ATGGAATCAATATTATTTGTTCTGTTCTACTATCATAACAGCAAGATCGA
TGGGAAGCCGCATACATGTAATGTTTCAATTATCCCTGTATTTCCTCCTG
AACATATTGATTTTGACAAAAAGGATCCAGTATGTCAGATTGAAGATTCT
ATGCTGAACTCTGTGAAACAGATAAACAAACCATCACAACTGAATCAAAA
GAATGAACAAGAGAAAGTAGTTATCGAAAAAGCACTTGATCAAATTAAAG
TTATTGTGAAAACACTGGTTGCGGTCGAGCAAATGATAAAGCTAAGACAT
GTCAATCCAGAGTTCTTATTCAGAAGAGCAAATGCATCCTCATCACTTTG
CACTGTCGGCCAACACACACAATTAGAATTCAACCTCAGTGCATTTGGTC
TCCAACAAGATCCAATGGAGGGGCTCAACTTTATAAAGATGATCATTGTT
CACTTGTATCAAAGTGTGAGTTTTGAAACTGATTGCCCTTTGGTTCAATA
CTTCAAAAGCATTGGTTTGACTGGCTTGGTTGATGAAGACTCATCGTGTA
TAAGTTCCTTGTCACTGTAAAAAAGGCTGCACAGAGAGTACAAGCAAGAG
GAAATGCCCTTGTGTATGCAGTGGCAAAGAGTGCAGCATGCAATGCAAAT
GTCGAAATTGTCGAAATAACAAGAAAGTAGTGCTGGATCCCTCAGGGTGC
AAATGTGTTTCTGGATGTGTCAATGTTGAAGGAAAGCGGAAATCAAAATG
TAAATGTTTGAAATTAGGGCTAAGTTGCATCAATTGCTCGTGCTTGAACT
GTCTTAACCCAGCTGGTCAAAACAACAAAAGAAAGGATTCTTCGTGTGAA
TCTAAAAGTAGAGCCACGAACTCTCACACAACTTACAAAAAGAAAAGAAC
GGAAGATTACGTTTCTTCTACACAGAATTCTGTGACTCTTGGTCAAGGAC
CCTGGTCATTAAATGAGACGGTGTGTTTGTATGTCAGTTCTGAATTAACG
CTTCGAATTCATGGTTGTTATGAAGTTGAAGAAATACATAAAACTTATAA
CTTTTTCTCAGGAGAAAAATTATCTACAGAAGACCTTATGCTGAAAGCTA
AAACGATAAACCAAATCAAGGGTAAACTCAAAGTAATGGGATACCTCCTT
GGCTGATTCAAATACATGCTTGAATTTGGATGTGGCAGACCACAATGAAA
TGAATGAAGACAAGCAATTTCAAATCCTCAACTTGTGCAGTAACTTACTC
AAAATACCTATCATTGTTATTCAACCGTTTTATCGACTATCTGTATTTAC
CATTCTCCCTGAACATCAATTAACAGACAAACCAATCATTTTGTCTTATG
ATTCAGAGAACAGACGCATTATGGGAACAAAACCACTTAAAAAGATAGAA
AATTTGACTTCGGAATCGGAACTTCACGGCAACTGTTATAAGTCCAGAAC
TGATGGAATCAATATTATTTGTTCTGTTCTACTATCATAACAGCAAGATC
GATGGGAAGCCGCATACATGTAATGTTTCAATTATCCCTGTATTTCCTCC
TGAACATATTGATTTTGACAAAAAGGATCCAGTATGTCAGATTGAAGATT
CTATGCTGAACTCTGTGAAACAGATAAACAAACCATCACAACTGAATCAA
AAGAATGAACAAGAGAAAGTAGTTATCGAAAAAGCACTTGATCAAATTAA
AGTTATTGTGAAAACACTGGTTGCGGTCGAGCAAATGATAAAGCTAAGAC
ATGTCAATCCAGAGTTCTTATTCAGAAGAGCAAATGCATCCTCATCACTT
TGCACTGTCGGCCAACACACACAATTAGAATTCAACCTCAGTGCATTTGG
TCTCCAACAAGATCCAATGGAGGGGCTCAACTTTATAAAGATGATCATTG
TTCACTTGTATCAAAGTGTGAGTTTTGAAACTGATTGCCCTTTGGTTCAA
TACTTCAAAAGCATTGGTTTGACTGGCTTGGTTGATGAAGACTCATCGTG
TATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024688XLOC_024688Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040565-proteinTCONS_00040565-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040565-exon-sc0002472-1575043694:20401..20979TCONS_00040565-exon-sc0002472-1575043694:20401..20979Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1575043694:19421..19692TCONS_00040565-exon-sc0002472-1575043694:19421..19692Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1575043694:18237..18968TCONS_00040565-exon-sc0002472-1575043694:18237..18968Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1510915933:20401..20979TCONS_00040565-exon-sc0002472-1510915933:20401..20979Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1510915933:19421..19692TCONS_00040565-exon-sc0002472-1510915933:19421..19692Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1510915933:18237..18968TCONS_00040565-exon-sc0002472-1510915933:18237..18968Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1491911889:20401..20979TCONS_00040565-exon-sc0002472-1491911889:20401..20979Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1491911889:19421..19692TCONS_00040565-exon-sc0002472-1491911889:19421..19692Clytia hemisphaericaexon
TCONS_00040565-exon-sc0002472-1491911889:18237..18968TCONS_00040565-exon-sc0002472-1491911889:18237..18968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002472supercontigsc0002472:18237..20979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0258208	0.0503586	0	0	0.0348208	0.0550317	0.132787	0.093235	0.0435173	0.107806	0	0.154768	0.0686903	0.142671	0.0733094	0.188813	0.0193836	0.0993376	0	0	0.04993	0.146125	0.0592112	0.0269158	0.0277226	0.0494836	0.141622	0	0.028659	0.0583981
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033467Tesmin/TSO1-like_CXC
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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