TCONS_00040564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040564
Unique NameTCONS_00040564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040564 ID=TCONS_00040564|Name=TCONS_00040564|organism=Clytia hemisphaerica|type=transcript|length=111bp
ACGACTTGTCGAAAAACGAAAATGTaacaggaaaaagaagaaatacaCAT
CAACATTAACGTTGGACAtggagtttttatttttttatctttgcaTTTCG
GTGATTTTAAC
Run BLAST on NCBI

transcript from alignment at sc0002472:12555..12725+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040564 ID=TCONS_00040564|Name=TCONS_00040564|organism=Clytia hemisphaerica|type=transcript|length=171bp|location=Sequence derived from alignment at sc0002472:12555..12725+ (Clytia hemisphaerica)
ACGACTTGTCGAAAAACGAAAATGTaacaggaaaaagaagaaatacaCAT
CAACATTAACGTTGGACAtggagtttttatttttttatcNGAAAAAGAAG
AAATACACATCAACATTAACGTTGGACAtggagtttttatttttttatct
ttgcaTTTCGGTGATTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024687XLOC_024687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040564-exon-sc0002472-1491911889:12555..12602TCONS_00040564-exon-sc0002472-1491911889:12555..12602Clytia hemisphaericaexon
TCONS_00040564-exon-sc0002472-1510915933:12555..12602TCONS_00040564-exon-sc0002472-1510915933:12555..12602Clytia hemisphaericaexon
TCONS_00040564-exon-sc0002472-1575043694:12555..12602TCONS_00040564-exon-sc0002472-1575043694:12555..12602Clytia hemisphaericaexon
TCONS_00040564-exon-sc0002472-1491911889:12663..12725TCONS_00040564-exon-sc0002472-1491911889:12663..12725Clytia hemisphaericaexon
TCONS_00040564-exon-sc0002472-1510915933:12663..12725TCONS_00040564-exon-sc0002472-1510915933:12663..12725Clytia hemisphaericaexon
TCONS_00040564-exon-sc0002472-1575043694:12663..12725TCONS_00040564-exon-sc0002472-1575043694:12663..12725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002472supercontigsc0002472:12555..12725 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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