TCONS_00040562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040562
Unique NameTCONS_00040562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040562 ID=TCONS_00040562|Name=TCONS_00040562|organism=Clytia hemisphaerica|type=transcript|length=764bp
TCTGCGATACCCTGGCTTGACAGAGACCTTCAAAATGTCTGGAATTTCTG
TCCAAGCTCAATCAGCTTATCCTTCCACCGATCAGCGTGGAGAACAGTCG
ATTAACCGCGATGCTAAAACCTCAGGTAGATANGGAAGAGAATGCGAGAC
GAATTTGAGCAGTCAAGTGTCAAAGGAAATTCAAAGAACGACAGATTGAG
CCGAGTTCCTATCTACACATTCAAGACATATTCAACATCAGTCATTAAAT
GTCAACATTTTGCAAATACAATAGAAGTAAATCGGGATATCATTGGTACC
CTTCCTTCGTTTTCAATTAGAAATGAACGCGCAATTGATATTCCGTCAGC
TCTTGTCTACCCATTGGCTCCTGCACCTATCAGTATTGCACatggaaatg
gaaaaaaacgtgAAACACCAAAAAGCAAGCTAATGAAACTACTGGTTGCA
GATACGACAAAGAAAGATCCTAGATCAGATGTTTCACTGAAGTCTATCAA
GAAGAAAGATAAGTCCTTTGTCATTGACCTGATTGCTGCTATTCGGACTA
TGACGAAGTTCATTGGAGACCTGCAAAAAGGGTACAACCGTATTGATAGT
GTTACTGACACATACAGATCCAATTCGATCAAAGGTGCTGAACGTAATGA
GTGTGGTAAAGATCAAAAAAGTTATGATTGCATCCAAGGAATCGATATTT
CCCTATGACTTCGGAGACTTCATGAGGAatggtgaaaacaaaacaaaatt
ggtTGAGCTGATGT
Run BLAST on NCBI

protein sequence of TCONS_00040562-protein

>TCONS_00040562-protein ID=TCONS_00040562-protein|Name=TCONS_00040562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MRDEFEQSSVKGNSKNDRLSRVPIYTFKTYSTSVIKCQHFANTIEVNRDI
IGTLPSFSIRNERAIDIPSALVYPLAPAPISIAHGNGKKRETPKSKLMKL
LVADTTKKDPRSDVSLKSIKKKDKSFVIDLIAAIRTMTKFIGDLQKGYNR
IDSVTDTYRSNSIKGAERNECGKDQKSYDCIQGIDISL
Run BLAST on NCBI

transcript from alignment at sc0002470:14754..15517

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040562 ID=TCONS_00040562|Name=TCONS_00040562|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0002470:14754..15517 (Clytia hemisphaerica)
ACATCAGCTCAaccaattttgttttgttttcaccatTCCTCATGAAGTCT
CCGAAGTCATAGGGAAATATCGATTCCTTGGATGCAATCATAACTTTTTT
GATCTTTACCACACTCATTACGTTCAGCACCTTTGATCGAATTGGATCTG
TATGTGTCAGTAACACTATCAATACGGTTGTACCCTTTTTGCAGGTCTCC
AATGAACTTCGTCATAGTCCGAATAGCAGCAATCAGGTCAATGACAAAGG
ACTTATCTTTCTTCTTGATAGACTTCAGTGAAACATCTGATCTAGGATCT
TTCTTTGTCGTATCTGCAACCAGTAGTTTCATTAGCTTGCTTTTTGGTGT
TTcacgtttttttccatttccatGTGCAATACTGATAGGTGCAGGAGCCA
ATGGGTAGACAAGAGCTGACGGAATATCAATTGCGCGTTCATTTCTAATT
GAAAACGAAGGAAGGGTACCAATGATATCCCGATTTACTTCTATTGTATT
TGCAAAATGTTGACATTTAATGACTGATGTTGAATATGTCTTGAATGTGT
AGATAGGAACTCGGCTCAATCTGTCGTTCTTTGAATTTCCTTTGACACTT
GACTGCTCAAATTCGTCTCGCATTCTCTTCCNTATCTACCTGAGGTTTTA
GCATCGCGGTTAATCGACTGTTCTCCACGCTGATCGGTGGAAGGATAAGC
TGATTGAGCTTGGACAGAAATTCCAGACATTTTGAAGGTCTCTGTCAAGC
CAGGGTATCGCAGA

Coding sequence (CDS) from alignment at sc0002470:14754..15517

>TCONS_00040562 ID=TCONS_00040562|Name=TCONS_00040562|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0002470:14754..15517 (Clytia hemisphaerica)
TCATAGGGAAATATCGATTCCTTGGATGCAATCATAACTTTTTTGATCTT
TACCACACTCATTACGTTCAGCACCTTTGATCGAATTGGATCTGTATGTG
TCAGTAACACTATCAATACGGTTGTACCCTTTTTGCAGGTCTCCAATGAA
CTTCGTCATAGTCCGAATAGCAGCAATCAGGTCAATGACAAAGGACTTAT
CTTTCTTCTTGATAGACTTCAGTGAAACATCTGATCTAGGATCTTTCTTT
GTCGTATCTGCAACCAGTAGTTTCATTAGCTTGCTTTTTGGTGTTTcacg
tttttttccatttccatGTGCAATACTGATAGGTGCAGGAGCCAATGGGT
AGACAAGAGCTGACGGAATATCAATTGCGCGTTCATTTCTAATTGAAAAC
GAAGGAAGGGTACCAATGATATCCCGATTTACTTCTATTGTATTTGCAAA
ATGTTGACATTTAATGACTGATGTTGAATATGTCTTGAATGTGTAGATAG
GAACTCGGCTCAATCTGTCGTTCTTTGAATTTCCTTTGACACTTGACTGC
TCAAATTCGTCTCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024685XLOC_024685Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040562-proteinTCONS_00040562-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040562-exon-sc0002470-1491911889:14754..15517TCONS_00040562-exon-sc0002470-1491911889:14754..15517Clytia hemisphaericaexon
TCONS_00040562-exon-sc0002470-1510915933:14754..15517TCONS_00040562-exon-sc0002470-1510915933:14754..15517Clytia hemisphaericaexon
TCONS_00040562-exon-sc0002470-1575043694:14754..15517TCONS_00040562-exon-sc0002470-1575043694:14754..15517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002470supercontigsc0002470:14754..15517 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.477426	0.0623358	0.402874	0.466147	0.0944562	0.136241	0.246553	0.244039	0.0538674	0.20017	0.0726595	0.0425729	0.101999	0.044151	0.217788	0.665328	0.335912	0	0	0.0711074	0.185416	0.180879	0	0	0	0	0	0.18709	0	0.144575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top