TCONS_00040559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040559
Unique NameTCONS_00040559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040559 ID=TCONS_00040559|Name=TCONS_00040559|organism=Clytia hemisphaerica|type=transcript|length=397bp
TTCAAAGGTAAAAGCTGATGCTCGTTGCAATGTACTGACAGGCAAATTGC
CTTTATTACAGCAAACTACTACTGGTAAAAGAGTTTCTGTAAAGAACAAG
AAGTTCCTTGATGATGCAAGTGATGCTGATGgtACTGACACGGAATCACA
AGAGAAGAAAAAGGTAAAGAATAACAATGGCTCTAAAGCCAAAAATGCTG
CAAAATACAGATCCAAAACCAGCGAAGAAAACAATAAGTGATGATTTGAA
AGCTAAGAAGATGGAGGACAAGAAGGCACTTGAGAAAGCAACCAGCTCTT
TTGCAGAGGACATAATGCAAATGGTCCAAATCAGAACTGGTGCTAATAAG
GAGAACAAAgggcaacaacaacaaccagcagtaattcaacaacaaca
Run BLAST on NCBI

transcript from alignment at sc0002470:6774..8211+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040559 ID=TCONS_00040559|Name=TCONS_00040559|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at sc0002470:6774..8211+ (Clytia hemisphaerica)
TTCAAAGGTAAAAGCTGATGCTCGTTGCAATGTACTGACAGGCAAATTGC
CTTTATTACAGCAAACTACTACTGGTAAAAGAGTTTCTGTAAAGAACAAG
AAGTTCCTTGATGATGCAAGTGATGCTGATGGTAAATGATAAATTTAAAC
TCTTCTACCTTCACTTATAGCCTTAAACCATTGTGATAAAAACTAATATA
GCCAAAAAAAATTAGACTTTTCCTAAaattatatttacaagaaaaattag
aaaaataatttatattgCCACAAATTTTCCCAGCAGGCAGCTTCACCGAT
ATAACTGTAGGATCTTTTAGGATACGTAATTGTTTTTGTGACTATAGCAC
GGacattaaaaaattaaactttttttaaggtACTGACACGGAATCACAAG
AGAAGAAAAAGGTAATCAAATTCAATATGATGTAACTGTAAAGCACTTTT
TTCCTATAGTTTCcttcaaaaaaaagttagcCGCAAATTTGTCACCTTTT
TCTGGGTGAAGAGATGGCCAAAAAGTTATAAACATTTCTTTAAAACTTCC
TTGCATAGGTAAAGAATAACAATGGCTCTAAAGCCAAAAATGCTGCAAAA
TACAGATCCAAAACCAGCGAAGAAAACAATAAGTGATGATTTGAAAGCTA
AGAAGATGGAGGTATATAGacatttgatttatttttcttcacTCTTATGT
TGCTTTTGATAATACAGAGAAAGCCAACTTTTGGATATTATGTTTTGCTA
AGGAGAGCTATAACAAGATAGACCCTATAACATTATCTAATAATAATGAT
GTCTAATAAAAGACATTTTTCAGATAtaaggctgtttttttgttaCTATA
CTATTCttgattaaaaatttttagGACAAGAAGGCACTTGAGAAAGCAAC
CAGCTCTTTTGCAGAGGACATAATGCAAATGGTAATTTTGGAAggatttg
attttctttgtctGACATTTTTAGGACACTATAGGTAGAGAACAATCTTA
AAGAGTACTTTTTTGCGGGGTAAATCAAATTTAAGCTTCATGTTATCTTT
CACTTTCACCATCCATATTTTATTGTTATTCATAGGTCCAAATCAGAACT
GGTGCTAATAAGGAGAGTAAGTACCCCTTTTTCTTAACTGTATACCAAAA
TGTTCCAGAAATCAAATTTTGTAGGGTGATGATTTCTCAGAAATTAATCA
TTTACTGATATGTCTTTGTGAATTCTGGAAAGGTTTATATATTTGTCATG
TTATTAAAGAACATAAACAGATCTCTTTcattaaaattgacattttgtaC
TTTATTCTGCTTTATTGCAAACATCTCTCTTCATTTTTGAAAGTGAGATG
TTAATTGAATTTCATAAAGGCAcacttttatttctttattgACAGACAAA
gggcaacaacaacaaccagcagtaattcaacaacaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024682XLOC_024682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040559-exon-sc0002470-1491911889:6774..6904TCONS_00040559-exon-sc0002470-1491911889:6774..6904Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:6774..6904TCONS_00040559-exon-sc0002470-1510915933:6774..6904Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:6774..6904TCONS_00040559-exon-sc0002470-1575043694:6774..6904Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1491911889:7153..7184TCONS_00040559-exon-sc0002470-1491911889:7153..7184Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:7153..7184TCONS_00040559-exon-sc0002470-1510915933:7153..7184Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:7153..7184TCONS_00040559-exon-sc0002470-1575043694:7153..7184Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1491911889:7332..7434TCONS_00040559-exon-sc0002470-1491911889:7332..7434Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:7332..7434TCONS_00040559-exon-sc0002470-1510915933:7332..7434Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:7332..7434TCONS_00040559-exon-sc0002470-1575043694:7332..7434Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1491911889:7648..7704TCONS_00040559-exon-sc0002470-1491911889:7648..7704Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:7648..7704TCONS_00040559-exon-sc0002470-1510915933:7648..7704Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:7648..7704TCONS_00040559-exon-sc0002470-1575043694:7648..7704Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1491911889:7859..7889TCONS_00040559-exon-sc0002470-1491911889:7859..7889Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:7859..7889TCONS_00040559-exon-sc0002470-1510915933:7859..7889Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:7859..7889TCONS_00040559-exon-sc0002470-1575043694:7859..7889Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1491911889:8169..8211TCONS_00040559-exon-sc0002470-1491911889:8169..8211Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1510915933:8169..8211TCONS_00040559-exon-sc0002470-1510915933:8169..8211Clytia hemisphaericaexon
TCONS_00040559-exon-sc0002470-1575043694:8169..8211TCONS_00040559-exon-sc0002470-1575043694:8169..8211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002470supercontigsc0002470:6774..8211 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.251361	0	0	0	0.114995	0	0	0	0	0	0	0	0	0.202611	0.542477	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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